PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc02_g12890

Common Name

GSCOC_T00029224001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Dof

Protein Properties

Length: 288aa MW: 31666.2 Da PI: 7.7502

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc02_g12890	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	111.4	4.1e-35	44	101	2	59
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 +++ lkcprC s+ntkfCyynny+ sqPr+fCkaC+r+Wt+GG+lrnvPvGggr++++ Cc02_g12890 44 QSEPLKCPRCGSSNTKFCYYNNYNKSQPRHFCKACKRHWTNGGTLRNVPVGGGRKNKR 101 57889***********************************************976554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-22	45	101	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.8E-31	47	100	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.223	48	102	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	50	86	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MGLNTKQVSS DHPLDWNQTL LDSGAVELPK PPPAKRQQQN QQQQSEPLKC PRCGSSNTKF 60 CYYNNYNKSQ PRHFCKACKR HWTNGGTLRN VPVGGGRKNK RLKTANAATI TTAITTTNTA 120 IRDCHNSPLA TINDQKNISD ILYQALISSS SSVQHDPINA FTSKTSMSNA ITGPMLSLPQ 180 DRHSLQFSFS SLSPFDTIPC SFPCSNLSLN NAYDYTAELD HLESSTVTTV TPSTTSAGVF 240 SQSSWQGQTT NTSSTLAEMP NYWNWNDMDP LVSADLNIPW DDIEIKP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027163208.1	1e-171	dof zinc finger protein DOF1.4-like
TrEMBL	A0A068TW62	0.0	A0A068TW62_COFCA; Uncharacterized protein
STRING	cassava4.1_034118m	4e-80	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6171	20	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	1e-28	Dof family protein