PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g12390
Common NameGSCOC_T00029289001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HSF
Protein Properties Length: 617aa    MW: 70213.7 Da    PI: 7.6528
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g12390genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind92.54.7e-29801922102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT............XTTSEEEEESXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks............kekiweFkhksF 86 
                   Fl k+y+i++++e++++isws++g+sf+v+d+++fa +vL kyF+h+nfaSF+ QLn+Y   k ++ e + +             + +  eF++ +F
   Cc02_g12390  80 FLLKVYDIVKNPETDSIISWSSSGTSFIVWDPHRFAAEVLGKYFRHNNFASFICQLNTYLQIKARKLEYQMNLptsinidgfrkiNWDRLEFQNAWF 176
                   9**********************************************************9999999887755588888887765558999******* PP

                   XXXXXXXXXXXXXXXX CS
  HSF_DNA-bind  87 kkgkkellekikrkks 102
                   +kgkk+ l+kikr+ +
   Cc02_g12390 177 QKGKKSWLKKIKRRIQ 192
                   *************975 PP
2HSF_DNA-bind66.84.7e-2140647525103
                   SSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind  25 gnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkkse 103
                   g+s++vld+ +fa +vLpkyFkhsnf+SF+ QLn YgF+k+  ++          e+++++F++g+++ll +i+r++ e
   Cc02_g12390 406 GTSLIVLDHLKFAAEVLPKYFKHSNFSSFIYQLNNYGFRKIGLRQ---------YEYENNWFQRGQEHLLMHIRRRNDE 475
                   589**************************************9988.........78*******************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.4E-3476190IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.76E-2677190IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.8E-2977190IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.4E-1180103IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.4E-2580190IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-11118130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-11131143IPR000232Heat shock factor (HSF)-type, DNA-binding
SMARTSM004152.2E-17385472IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.99E-17406472IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.2E-18406472IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.4E-20406472IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MEATNQETSE VTNSIRYELK NGENEGERVN PTIPIGTDVS ESSSNAIVTA TAISTIPLAK  60
EGYANGASSS SSRVRLPPPF LLKVYDIVKN PETDSIISWS SSGTSFIVWD PHRFAAEVLG  120
KYFRHNNFAS FICQLNTYLQ IKARKLEYQM NLPTSINIDG FRKINWDRLE FQNAWFQKGK  180
KSWLKKIKRR IQGTQSAHLC KPLEIEGQLS LSVEQKKFES LMQEHDALKV EMMKLKDMEE  240
NLVKEIEILE KQAQCITSNR QNMLKYTIHE VLIRKRKLQS NDAANELGSG GRQSIESSVE  300
LLDEGGTSHG SRKNSPRAQS GTGKTFSNVD LSTTVQEEED CTVSMGKFSD FYNAVYSSLE  360
KQLMDDINCK NVPEEEKANL QQNVVIPLED LIEGPADWNE FAKGIGTSLI VLDHLKFAAE  420
VLPKYFKHSN FSSFIYQLNN YGFRKIGLRQ YEYENNWFQR GQEHLLMHIR RRNDEDPTIM  480
KKRGPKKQHV TAARPSMEAE LKIFEDHINA LKEDITRSKY HMGKLESSIA TFKKNVKIME  540
AKSKVLIKVL ARIFNPALVE KIIQHVEEEP ELEILQTMKR RRVILPQSSN TTTKSTDNGA  600
CGKDQDDQEA NTSIVE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-217819127130Heat shock factor protein 1
5d5v_B1e-217819127130Heat shock factor protein 1
5d5v_D1e-217819127130Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183189LKKIKRR
2578582KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027156013.10.0heat stress transcription factor A-2-like
TrEMBLA0A068TWB80.0A0A068TWB8_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1603026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.12e-27heat shock factor 1