PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g08220
Common NameGSCOC_T00029830001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 114aa    MW: 12816.6 Da    PI: 9.9702
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g08220genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.70.000246451155
                 HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 rR +++ +++  L++l+ +      +K + a++L +A  +Ik Lq
  Cc02_g08220  6 RRSQKLADKITALQKLVSPY-----GKTDTASVLHEASVFIKVLQ 45
                 7999**************99.....9****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.42144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-8660IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-6658IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MQVPVRRSQK LADKITALQK LVSPYGKTDT ASVLHEASVF IKVLQDQIEN TFNRVRSTSM  60
DHQYSQSKIT GESQFDLRSM GFCLVPVSLT RNLLREDAFN PYSTANTSLH RIL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027104519.13e-74transcription factor bHLH103-like
TrEMBLA0A068TUS12e-78A0A068TUS1_COFCA; Uncharacterized protein
STRINGXP_006486499.19e-32(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1544456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.11e-20bHLH family protein