PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc02_g05280 | ||||||||
Common Name | GSCOC_T00039032001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | WRKY | ||||||||
Protein Properties | Length: 140aa MW: 15453 Da PI: 6.2434 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.9 | 1.4e-30 | 9 | 69 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK++ +s+fprsY+rCt++ +Cp+kk+v+r ++dp+++e+tY+g+H+++ Cc02_g05280 9 EDGYTWRKYGQKDILNSRFPRSYFRCTHQklyQCPAKKQVQRLDDDPNIFEVTYRGDHTCH 69 7****************************9999**************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.3E-29 | 6 | 69 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.41E-27 | 6 | 70 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-39 | 8 | 70 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.887 | 9 | 71 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.3E-28 | 9 | 69 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MGNTEIPPED GYTWRKYGQK DILNSRFPRS YFRCTHQKLY QCPAKKQVQR LDDDPNIFEV 60 TYRGDHTCHL STVNMGGGSS TSGGAAAGPS TSRYGRDVDY PVADMADVMF NSGSSSSTSM 120 DLIFSSMDDK WPDSADKKN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 3e-21 | 9 | 68 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00304 | DAP | Transfer from AT2G40740 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027101331.1 | 4e-73 | WRKY transcription factor 55-like | ||||
Swissprot | Q9SHB5 | 3e-45 | WRK55_ARATH; WRKY transcription factor 55 | ||||
TrEMBL | A0A068V008 | 1e-100 | A0A068V008_COFCA; Uncharacterized protein | ||||
STRING | cassava4.1_023169m | 3e-60 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9280 | 18 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 7e-43 | WRKY DNA-binding protein 55 |
Publications ? help Back to Top | |||
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