PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g05270
Common NameGSCOC_T00039030001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family WRKY
Protein Properties Length: 334aa    MW: 36602.9 Da    PI: 7.1658
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g05270genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY734e-23130191159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dg++WrKYGqKe+ ++++pr Y+rCt++   gC+++k+v+r +e+p v ++tY g+H+++
  Cc02_g05270 130 VEDGHAWRKYGQKEILNTTYPRCYFRCTHKhdqGCKATKQVQRIKEEPVVYQTTYFGHHTCS 191
                  58***************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-23118191IPR003657WRKY domain
PROSITE profilePS5081118.842125188IPR003657WRKY domain
SuperFamilySSF1182906.02E-23127191IPR003657WRKY domain
SMARTSM007743.1E-35130192IPR003657WRKY domain
PfamPF031064.2E-23131190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDLPNPQQLR TIQETVIGKL LKGKESATQL VALLKKPRSS GDRGGSVSAE ELALQISRSF  60
SESISAFGSL EGNGICQIVA ADGVVRVSSV DRGSSKTSDN GRKRLGVKDR RGCYRRRNVA  120
QSSIIVSSTV EDGHAWRKYG QKEILNTTYP RCYFRCTHKH DQGCKATKQV QRIKEEPVVY  180
QTTYFGHHTC SDTLMRAPQI ISDTDPMDSC LLSFETKAPT RQNLLLYPNR VMTTATATGN  240
QEFKDETQSD VSDNKSCLDS STMLQNPTTN SETSGPRSSN VNGAYHEEVV SGMHSCSSTP  300
LQGLDMEDFS TKFDDLDDHL LFGDMAGLLP ALS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-23125190368OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027104131.10.0WRKY DNA-binding transcription factor 70-like
TrEMBLA0A068UZP00.0A0A068UZP0_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61992233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-39WRKY DNA-binding protein 70