PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g03670
Common NameGSCOC_T00020259001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 321aa    MW: 36042.3 Da    PI: 8.693
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g03670genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.4e-12138190155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  +r  h  +Er+RR+++ + ++ Lr+llP       ++K   ++  ++Av+YIk Lq
  Cc02_g03670 138 KRILHRDIERQRRREMANLYASLRSLLPLdY---VKGKRAISDHMQEAVNYIKCLQ 190
                  6889*************************66...9*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.19E-9136193No hitNo description
PROSITE profilePS5088813.281137189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-9138203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-13138213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-9138190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.005143195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MIKGTYYLVM YCPHSSCNRM VHIHTISPLS TTWCEHVSGV LGPVFVRYPN WADLRGLDMY  60
PLQQGNELEN QNPCRPCQPD KILNDLVTLE STASLPPATS ITGKKHHHRR FLPAIQQENK  120
KQDHEDTTTT NSNQHKLKRI LHRDIERQRR REMANLYASL RSLLPLDYVK GKRAISDHMQ  180
EAVNYIKCLQ KNINQLGSRR DRLMIPLCNL SSTFSFSSGN RSTSADSQCL RDCGAIVRVS  240
QGGDGVEVLI SISSKEETFP ISRVLKMLLG EGLDVVSCVS TATNEIKVHK ILAEVTDGRK  300
SIDTLALQHQ LMNAINPPES *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137149KRILHRDIERQRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027103892.10.0transcription factor bHLH36-like
TrEMBLA0A068UCB90.0A0A068UCB9_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.15e-32bHLH family protein