PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g03500
Common NameGSCOC_T00020235001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C3H
Protein Properties Length: 417aa    MW: 45716.6 Da    PI: 7.5459
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g03500genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.94.1e-0992114326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  ++lC+f+ + G C+yGd+C++ H+
  Cc02_g03500  92 EKLCNFWVQ-GNCSYGDKCRYLHS 114
                  579******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.882954IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.0052955IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-789114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.93989116IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-691115IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-692114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-793113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.106.1E-17114227IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.0E-5120159IPR001680WD40 repeat
SuperFamilySSF509781.37E-46122410IPR017986WD40-repeat-containing domain
PfamPF004004.8E-5123159IPR001680WD40 repeat
PROSITE profilePS5008214.251127168IPR001680WD40 repeat
PROSITE profilePS5029421.199127329IPR017986WD40-repeat-containing domain
PROSITE patternPS006780146160IPR019775WD40 repeat, conserved site
PRINTSPR003203.3E-6146160IPR020472G-protein beta WD-40 repeat
SMARTSM0032020199236IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.105.6E-31228411IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.0016243280IPR001680WD40 repeat
PfamPF004000.021247280IPR001680WD40 repeat
PROSITE profilePS5008211.812250289IPR001680WD40 repeat
PRINTSPR003203.3E-6267281IPR020472G-protein beta WD-40 repeat
SMARTSM003202.7E-4283320IPR001680WD40 repeat
PfamPF004000.0018285319IPR001680WD40 repeat
PRINTSPR003203.3E-6307321IPR020472G-protein beta WD-40 repeat
SMARTSM0032016324367IPR001680WD40 repeat
SMARTSM0032010370407IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MDVDGSKRIF QRLGPGAATA SSSGSNSNNK QQKVCFHWRA GKCSRFPCPY LHRELPPPQQ  60
SNPNFNNSWG RQQQQHQQGY GNRGGGVIKK TEKLCNFWVQ GNCSYGDKCR YLHSWSTGDC  120
FSLLTQLEGH EKVVTGIALP SGSDRLYTGS KDETVRVWDC QSGQCTGVIS LGGEIGCMRS  180
EGPWVFVGLT NFVRAWNTQT TTDLSLSGPV GQVYALVVGN DLLFAGVQDG TILAWKFNTA  240
TNSFEPAASL KGHNLAVVTL VVGANRLYSG SMDHSIRVWS LETLQCLQTL TDHSNVVMSV  300
LCWDQFLLSC SLDKTVKVWA ATELGSLEVT YTHNEEHGLL TLCGMHDLDG KPVLLCSCND  360
NCIRVYDLPS FCERGKIFAK QEVRSIQTGP PGLFFTGDGT GQVKVWQWST ESTSTK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-201244108323Tako8
6g6n_A1e-201244108323Tako8
6g6n_B1e-201244108323Tako8
6g6n_C1e-201244108323Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027110404.10.0zinc finger CCCH domain-containing protein 48-like
RefseqXP_027161267.10.0zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A068U9W20.0A0A068U9W2_COFCA; Uncharacterized protein
STRINGXP_002510854.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28842134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein