PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g03030
Common NameGSCOC_T00020173001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 308aa    MW: 34477.6 Da    PI: 5.269
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g03030genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.1e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd+ lvd++++ G gtW++ ++  g+ R++k+c++rw +yl
      Cc02_g03030 14 KGAWSPEEDKTLVDYINKNGHGTWRSLPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding48.61.9e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++ +eE+  + +++++lG++ W++Ia++++ gRt++++k++w+++l
      Cc02_g03030  67 RGPFCPEEEASIMQLHTMLGNK-WAAIASHLP-GRTDNEIKNFWNSHL 112
                      79999*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-21563IPR009057Homeodomain-like
PROSITE profilePS5129415.299961IPR017930Myb domain
SuperFamilySSF466897.11E-2912108IPR009057Homeodomain-like
SMARTSM007174.4E-121363IPR001005SANT/Myb domain
PfamPF002491.7E-151461IPR001005SANT/Myb domain
CDDcd001674.02E-91661No hitNo description
PROSITE profilePS5129423.41462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2564115IPR009057Homeodomain-like
SMARTSM007171.2E-1266114IPR001005SANT/Myb domain
PfamPF002496.3E-1467112IPR001005SANT/Myb domain
CDDcd001678.95E-972112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGRSPCCDKE AVKKGAWSPE EDKTLVDYIN KNGHGTWRSL PKLAGLLRCG KSCRLRWTNY  60
LRPGIKRGPF CPEEEASIMQ LHTMLGNKWA AIASHLPGRT DNEIKNFWNS HLKKRAKASL  120
DQPESILTSD DFGLETPSTR HMVQWESARL EAEARLSMDP LLLSSSSAAK TECDYFLRLW  180
NSEVGESFRQ GVACQSPLSP VSSSIKDEST SVVTTQTDSA RIFGSADATE NQKQEEHMSC  240
HNSEELLTGS DSSKSHELDN SSETKMRLLQ DLPNGNDMEF LQEPIDDVSM YLQEPISLTD  300
CYPWKQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24141167108B-MYB
1h8a_C2e-241411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027103808.10.0transcription factor MYB41-like
RefseqXP_027103809.10.0transcription factor MYB41-like
SwissprotQ9M2D95e-98MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A068UAM30.0A0A068UAM3_COFCA; Uncharacterized protein
STRINGcassava4.1_026502m1e-117(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.12e-97myb domain protein 17