PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g02240
Common NameGSCOC_T00020073001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family WRKY
Protein Properties Length: 271aa    MW: 30124.3 Da    PI: 8.9034
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g02240genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.71.1e-28185243259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   D ++WrKYGqK++k+s++pr+YYrC+++ gC+++k+ver+  dp++ ++ Y+geH h+
  Cc02_g02240 185 ADSWAWRKYGQKPIKDSPYPRNYYRCSTSkGCTARKQVERCPADPSMYVVSYSGEHSHP 243
                  69************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-30170245IPR003657WRKY domain
SuperFamilySSF1182901.83E-26177245IPR003657WRKY domain
PROSITE profilePS5081131.364179245IPR003657WRKY domain
SMARTSM007742.2E-34184244IPR003657WRKY domain
PfamPF031069.8E-25186243IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MADDWDLYAV VRSCFNAAAT STASSSTTTD AAIAPVENSS LPSGETSLSS SFLASPSFQS  60
GHTSSDFPGF ANHTRDSFRG LEEIYKEPYE DIVQSFVDLN SQAQHIQAIQ GPGCTADQTP  120
QQQRIYGQPQ QLMQQPQRYS HLSREMFVGA SLSFPSTSPQ PERPRRRKNQ QAKRIQQMTQ  180
EELSADSWAW RKYGQKPIKD SPYPRNYYRC STSKGCTARK QVERCPADPS MYVVSYSGEH  240
SHPRPTHRSS LAGTTRSKPL LPVSLQPPRP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-18175245877Probable WRKY transcription factor 4
2lex_A3e-18175245877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163167PRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027103677.11e-169WRKY transcription factor 22-like
TrEMBLA0A068U9940.0A0A068U994_COFCA; Uncharacterized protein
STRINGMigut.F00276.1.p2e-67(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA138601014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.14e-47WRKY DNA-binding protein 27