PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g01860
Common NameGSCOC_T00020023001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family WRKY
Protein Properties Length: 378aa    MW: 41682.9 Da    PI: 6.705
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g01860genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.31.8e-29148209159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDg++WrKYGqK++ g+++pr+YYrCt++   gC ++k+v+rs+edp+++e+tY+g+H+++
  Cc02_g01860 148 LDDGFSWRKYGQKDILGAKHPRGYYRCTHRhvqGCLATKQVQRSDEDPTIFEVTYRGRHTCN 209
                  59***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.94143206IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.9E-29145210IPR003657WRKY domain
SuperFamilySSF1182902.88E-26147210IPR003657WRKY domain
SMARTSM007741.8E-42148210IPR003657WRKY domain
PfamPF031062.8E-27149208IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MENSADWELG NLINELMLGR ELAKQLQVHI NAPSSSPESR DSLVHKILNS YEKALNMLKS  60
NAAVGVGERE QSTGTTIAMS ESRSRQNTGL AIGMSDSPRS LSASPHSDDS DREFRDQDSR  120
DVSRKRKTMP RWTKHVQVCP GMGLEGPLDD GFSWRKYGQK DILGAKHPRG YYRCTHRHVQ  180
GCLATKQVQR SDEDPTIFEV TYRGRHTCNQ GSEPKPPAAA AEKPETSSQG KHRQVTSQPQ  240
QNQQGILLSF QRDLKVNTKD LDSHNQHFPT FDFASTSTTK PETHLFLPSL TDNNFAGDLS  300
PPFMTPVTSG SAYFSVSPTH ISSYAENQNS YASESEFTGL ISAATSTTNS PTVGSDFPFS  360
QIGFDTNFTF DNSGFFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-21148208868OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122127SRKRKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027103610.10.0probable WRKY transcription factor 41
TrEMBLA0A068U9W80.0A0A068U9W8_COFCA; Uncharacterized protein
STRINGPOPTR_0012s01380.11e-144(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18432467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.12e-54WRKY family protein