PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc01_g21420 | ||||||||
Common Name | GSCOC_T00004982001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | bZIP | ||||||||
Protein Properties | Length: 182aa MW: 20788.6 Da PI: 6.9327 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 48 | 2.8e-15 | 21 | 83 | 2 | 64 |
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 ++lk+ +rk++NR++A+rsR +K +++eeL + v L++eN+++ ++++ +++++++ s+++ Cc01_g21420 21 CDLKKMKRKESNRLSAQRSRNKKHQQLEELLRQVNLLKEENQSYSDRINATNQMYQNMASQNK 83 89*********************************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 9.1E-11 | 19 | 78 | No hit | No description |
SMART | SM00338 | 5.0E-13 | 20 | 84 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.484 | 22 | 85 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.5E-12 | 23 | 83 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.66E-10 | 23 | 79 | No hit | No description |
CDD | cd14702 | 2.14E-15 | 25 | 76 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 27 | 42 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MAPDKSFMNF GSKGDPCNAK CDLKKMKRKE SNRLSAQRSR NKKHQQLEEL LRQVNLLKEE 60 NQSYSDRINA TNQMYQNMAS QNKVLRAQFD ELSDRLRSMN DVIHIASEVN GVAIDTQEIP 120 DTSHKPWQLP FPAQPMLQDP FLPQPILQDS FLPQPPPLLQ DPWHLSCVNQ PIAASADYFL 180 D* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027148224.1 | 1e-129 | bZIP transcription factor 53-like | ||||
Refseq | XP_027155070.1 | 1e-129 | bZIP transcription factor 53-like | ||||
TrEMBL | A0A068V8U7 | 1e-131 | A0A068V8U7_COFCA; Uncharacterized protein | ||||
STRING | Aquca_022_00003.1 | 4e-36 | (Aquilegia coerulea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2810 | 23 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G62420.1 | 2e-32 | basic region/leucine zipper motif 53 |