PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g18880
Common NameGSCOC_T00016142001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 314aa    MW: 32970.4 Da    PI: 6.4059
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g18880genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28.3e-10162206554
                  HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  Cc01_g18880 162 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 206
                  99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-15155216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.12157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-15159216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-7162206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-11163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MANNPTDGPS DDFLEQILGF PAYAGAAAPT DPNLAPGNDA HALPPPMMLQ LSSGDASSHL  60
ASVGLGVGVG LGVGTGGTFH GGNFPLGLSL EQGKAGGFVK MEEASGSGKR FRDDVVDGRP  120
AASSVRPGFH GQPLPTAVPV VPHPPAIRPR VRARRGQATD PHSIAERLRR ERIAERIRAL  180
QELVPSVNKT DRAAMLDEIV DYVKFLRLQV KVLSMSRLGG AGAVAPLVTD IPISSVEEES  240
GEGGRPQPAW DKWSNDGTER QVAKLMEENV GAAMQFLQSK ALCIMPISLA SAIYHTQPPD  300
ASNLIKPETN PPP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166171RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027095851.10.0transcription factor UNE12 isoform X1
SwissprotO227681e-133UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A068U7Z50.0A0A068U7Z5_COFCA; Uncharacterized protein
STRINGevm.model.supercontig_52.971e-154(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57992434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-104bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]