PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g16960
Common NameGSCOC_T00016379001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family Trihelix
Protein Properties Length: 364aa    MW: 41056.4 Da    PI: 9.459
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g16960genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix61.42.1e-1970152286
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  Wt+qe+ +Li+a++e++ +l++g+lk+ +Weevs+ + ++ g+   ++s++qC++k+e+l+kry++++           ++++yf+ ++
  Cc01_g16960  70 WTHQETICLIQAYQEKWYSLKKGQLKASQWEEVSITVaARCGYdvpSKSATQCRHKIEKLRKRYRAERLKPYP------NSWQYFELMD 152
                  ************************************966778855567*****************98766654......3488888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.1E-1969154No hitNo description
PROSITE profilePS500906.0469130IPR017877Myb-like domain
SMARTSM005955.4E-577159IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDNPSSPLLL PPSNLTQPTA TATAITTSNL PSPDIKPKLE LIPAFNPNPN SNSNSHTPTS  60
PPKKTQPLPW THQETICLIQ AYQEKWYSLK KGQLKASQWE EVSITVAARC GYDVPSKSAT  120
QCRHKIEKLR KRYRAERLKP YPNSWQYFEL MDRMERGPLP ISAARPVAAV KYKKNANSVG  180
GGGNYDESDS EEGGGHYGGL EVKKNKLKSI NNIVRGGEIG VSGSSSSNRN VNRMGMNRNF  240
GGVGESARVL RGLRTPMNQK RKGYFQNDES DEEDEEERDE EEGLEEDKEV VVGRELASEI  300
RGFAERFMRM ENKKIEMMRE TERYRMEMEK KRMDMILEAQ RKVVDTIGRA FGADKKVKMA  360
HEN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027176521.10.0trihelix transcription factor ASIL2
TrEMBLA0A068U5P80.0A0A068U5P8_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000517881e-127(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA124661516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.16e-27Trihelix family protein