PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g14580
Common NameGSCOC_T00028464001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bZIP
Protein Properties Length: 267aa    MW: 30344.2 Da    PI: 5.3158
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g14580genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.83.1e-10140196561
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                  ++ rr  +NR++A+rsR+++ ++i+eL +k+k L+   ++L ++le+  +  + lk+
  Cc01_g14580 140 RKLRRTVSNRLSAQRSRLKRAQYIDELLKKIKDLQDYVESLTSQLESCIEGQKMLKM 196
                  678999************************************999987666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.4E-6136200IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.324138185IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.76E-9140195No hitNo description
PfamPF001702.3E-8140198IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.2E-9140197No hitNo description
CDDcd147033.77E-9141186No hitNo description
PROSITE patternPS000360143158IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MEDKVSRSAS RPPIYPKFNS STPLPTFTMM FPSTLAEAFE NSSHGAGAGA GQNGKSVAIS  60
PEHRVDLNAP PSPHVTLDAE EEETDKNQIE NTPPSTSKKC HINQDDEEEE FSHKAKRIMT  120
LDEAIQFEKN DRDLSLEDER KLRRTVSNRL SAQRSRLKRA QYIDELLKKI KDLQDYVESL  180
TSQLESCIEG QKMLKMQKAI LEQRLKNCID KSALCDREIE EKQAEIRRLK YLYEALQKEG  240
MMLRGIEQYL NLDAMNVSSF NATDAM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027126766.11e-161basic leucine zipper 61-like
TrEMBLA0A068ULC20.0A0A068ULC2_COFCA; Uncharacterized protein
STRINGXP_009783967.18e-30(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76151929
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07160.12e-12bZIP family protein