PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g14310
Common NameGSCOC_T00028428001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C3H
Protein Properties Length: 662aa    MW: 71629 Da    PI: 6.7839
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g14310genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-07230250526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C++f++  tC++Gd C +aHg
  Cc01_g14310 230 PCPDFRK-ATCQRGDACEYAHG 250
                  8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127962.3E-10199IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484038.86E-1728110IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.45730139IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0023060IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.201.4E-1730110IPR020683Ankyrin repeat-containing domain
CDDcd002045.68E-1232108No hitNo description
SMARTSM002481.7E-46597IPR002110Ankyrin repeat
PROSITE profilePS5008812.7765100IPR002110Ankyrin repeat
SMARTSM003560.0051225251IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-5230250IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.38230252IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-4258288IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.174260284IPR000571Zinc finger, CCCH-type
SMARTSM0035625260283IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MVAVEREGHG IDELAVWYGR RIGSKEMGLE ERTPLMIASM FGSKRVVNYI LEKGGIDVNK  60
TCGSDGATAL HCAAAGGSAA SLEIVRLLID ASADVNSVDA NGKRPVDLIA PFQNSSFNLR  120
SKALEVILNG GNYTEGASES DDRPTEREDG RVSPPLPSKD GMEKKEYPVD PSLPDIKNGI  180
YGTDEFRMYT FKIKPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPDFRKATCQ  240
RGDACEYAHG IFECWLHPAQ YRTRLCKDET NCTRRVCFFA HKPEELRPLY ASTGSAVPSP  300
RSFSSSASTF DIASISPLAL GSPSIMMPPT STPPMTPSGA SSPIGGSMWP NQPTLAPPTL  360
QLPGSRLKAA INARDIDFDA ELLGLDGNRQ WRQQLLDDLS SLSSPSSRNH GLGTPGAFAA  420
SSVEQNSDGI RHGGLKPTNL DDVFGSLDST ILSQLQGLST DAGLNQLLSP TAHQMRQNMN  480
QQLRSSYPSN LASSSIRTSS AFGMDPSGST ATVLNPRSAA FAKRSQSFID RSAVNRHSGI  540
SSPISSASMM LSPFSDWSSP DGKLDWGIQR EEINKLRKSA SFGFRNSGGN FVSTAASRST  600
AANKPDASWV ESSVKDGPSV TPGQAEFHGK DHQQYLLNSG GSEMHPSWVD QLYMEQEQIL  660
A*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027090201.10.0zinc finger CCCH domain-containing protein 66-like
RefseqXP_027164140.10.0zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A068ULW80.0A0A068ULW8_COFCA; Uncharacterized protein
STRINGcassava4.1_002672m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25582245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-168C3H family protein