PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g14010
Common NameGSCOC_T00028386001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 385aa    MW: 42193.5 Da    PI: 8.0593
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g14010genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.72.5e-07147170123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  y+Cp+Cg+ F ++s+L++H+++ H
  Cc01_g14010 147 YPCPICGEIFQNPSLLEQHQSVkH 170
                  99******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0026147170IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.138147175IPR007087Zinc finger, C2H2
PROSITE patternPS000280149170IPR007087Zinc finger, C2H2
SuperFamilySSF563992.88E-12172383No hitNo description
Gene3DG3DSA:3.90.228.102.9E-5319383IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MASLRPLLSN LLYLLLLLLL HLGCFIFNTS SSSSHRQSKK RKLSDTPVTP SPPASRLKFT  60
PSKALSSSWS FLKRAFCSKP ATPTSSPAAI PILSPSSSTR SLTQPATAIH LGSSDTLLSD  120
HQTSIRPVSE SDISSDQPFF PLRNNIYPCP ICGEIFQNPS LLEQHQSVKH AVSELVDGDT  180
GKNIVNIIFR TGWPGMAKSP AVHRILKIHC GPKILMRFEE YRECVMSAAA GNGGVRRRDE  240
RCIADGNELL RFHCTTFLCE LGQNGNSSLC NHQYCSVCGI IASGFSPKMD GISTLSTSWR  300
AHASIPEDME EEFKYLRVKR AMLVCRVIAG RIGCDPEDAD KLDPGFDSLV GRENGVPARL  360
DEEDELLVFN PRAVLPCFVI VYTV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027110817.10.0uncharacterized protein LOC113730374
TrEMBLA0A068ULR40.0A0A068ULR4_COFCA; Uncharacterized protein
STRINGXP_009630930.11e-170(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118341821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-104C2H2 family protein