PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g11840
Common NameGSCOC_T00028097001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family AP2
Protein Properties Length: 507aa    MW: 55759.5 Da    PI: 6.2032
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g11840genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.8e-17167216155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Cc01_g11840 167 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 216
                  78*******************......55************************997 PP
2AP2422.3e-13259309155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Cc01_g11840 259 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 309
                  89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.5E-15167224IPR016177DNA-binding domain
PfamPF008473.4E-9167216IPR001471AP2/ERF domain
SMARTSM003801.7E-31168230IPR001471AP2/ERF domain
PROSITE profilePS5103217.78168224IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-16168224IPR001471AP2/ERF domain
CDDcd000187.42E-11168223No hitNo description
CDDcd000183.03E-25259319No hitNo description
SuperFamilySSF541711.24E-16259318IPR016177DNA-binding domain
PfamPF008475.6E-9259309IPR001471AP2/ERF domain
SMARTSM003808.7E-31260323IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-15260317IPR001471AP2/ERF domain
PROSITE profilePS5103215.514260317IPR001471AP2/ERF domain
PRINTSPR003675.6E-6261272IPR001471AP2/ERF domain
PRINTSPR003675.6E-6299319IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MLDLNLSVVN DEEAGIFEEG MGEYESAEET SDSSVVNAEA AEASSNATTV DDDTCSARAG  60
ANSSSDLLTF NFDILKVNGA NRGEEVEGED ENQVVFGGRM TAAHQPDFVT KNLFPVAELG  120
PGRAPDQARS NASNWADLSF SHQPKQPPQQ QQQQVKKSRR GPRSRSSQYR GVTFYRRTGR  180
WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGIDAD INFTICDYEE DMKQMKNLTK  240
EEFVHILRRQ STGFSRGSSK YRGVTLHKCG RWEARMGQFL GKKYIYLGLF DSEIEAARAY  300
DKAAIKCNGR EAVTNFEPST YEPEMPSNMV QPHSQNEGSH YDLDLNLGIS TSSGKENGSS  360
RDVHYHPYDV QKARISKVDI SSTTVNSPPL KGLPLTPERP QLWTGVYSNS MPNYKERVIE  420
NRFEVGSSQG PQKWAWQMQS PLSATPVTVF STAASSGFSS SASNASSPSS KAPNSSAVGL  480
CFASYPVSSA NNSQCRFQLG PQWPPT*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027108604.10.0LOW QUALITY PROTEIN: ethylene-responsive transcription factor RAP2-7-like
SwissprotB8AXC31e-110AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A068UKW40.0A0A068UKW4_COFCA; Uncharacterized protein
STRINGXP_009784819.11e-173(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-106related to AP2.7