PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc01_g11670

Common Name

GSCOC_T00028073001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Dof

Protein Properties

Length: 290aa MW: 31581.9 Da PI: 7.7891

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc01_g11670	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	128.8	1.5e-40	36	97	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+alkcprCdstntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss Cc01_g11670 36 PEQALKCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 97 6899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	25	94	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.6E-34	38	94	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.581	40	94	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	42	78	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005730	Cellular Component	nucleolus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MDPSGAQHHH QDMSSQTLES MLVCTKAQQD KKPRPPEQAL KCPRCDSTNT KFCYYNNYSL 60 TQPRYFCKSC RRYWTKGGTL RNVPVGGGCR KNKRSSSSSS SSKRGQDQAV VATNTNPLSS 120 LTNLPYDSDI SLAIARLQKQ TNGHLGFDHD HELPMLGNPN NPHSAGGFFD AFRGGFLENP 180 NGFHNLYYGM SNGNMGHVEN GGGLGLNGSE DMSMVPYEDI GGATTTATTV TTVKQEICNA 240 RDGENRVLWG FPWQIGGEGN MGSDLDSGRQ SWNNGFGSSW HGLLNSPLM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027108486.1	0.0	dof zinc finger protein DOF2.1-like
TrEMBL	A0A068UK67	0.0	A0A068UK67_COFCA; Uncharacterized protein
STRING	XP_009622795.1	1e-120	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28510.1	9e-44	Dof family protein