PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc01_g11350 | ||||||||
Common Name | GSCOC_T00024263001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | NAC | ||||||||
Protein Properties | Length: 310aa MW: 34918.5 Da PI: 7.1629 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 154 | 6.6e-48 | 12 | 137 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 ppG+rFhP+deel+v+yL++kv++++l++ v+ e+++y+++PwdLpkk+ +e+ewyfFs+rd+ky++g ++nr+++sgyW+atg+dk++ls++g+ Cc01_g11350 12 PPGVRFHPSDEELIVFYLHNKVNSRPLPA-AVVGEIELYSHNPWDLPKKALFGEEEWYFFSPRDRKYPNGAQPNRTAASGYWRATGTDKPILSSSGAR 108 9****************************.89***************8888899******************************************** PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g+kk+Lvfy g+ +g+ktdW+m eyrl Cc01_g11350 109 IGIKKSLVFYIGKPLNGVKTDWIMIEYRL 137 ***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-59 | 7 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.048 | 11 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-24 | 12 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
METQPISSFQ FPPGVRFHPS DEELIVFYLH NKVNSRPLPA AVVGEIELYS HNPWDLPKKA 60 LFGEEEWYFF SPRDRKYPNG AQPNRTAASG YWRATGTDKP ILSSSGARIG IKKSLVFYIG 120 KPLNGVKTDW IMIEYRLPDT HKKPSRSKGS MRLDDWVLCR IRQKGTMSKN SWEVPQSPNT 180 VMEDTPNLKE LPPAYPANNA SDICSTYFLS KDCHLLAKLL ATQDLPPIET NTIATYHGGN 240 KSQNCETVYE HGLIKENQVA NSFFPSSLNQ QGKPIEEIGY ESIPPSEKAM TNLNEFFLAG 300 NMDCTSFYN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-67 | 2 | 164 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-67 | 2 | 164 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-67 | 2 | 164 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-67 | 2 | 164 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-67 | 2 | 164 | 11 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-67 | 2 | 164 | 11 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-67 | 2 | 164 | 11 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-67 | 2 | 164 | 11 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-67 | 2 | 164 | 11 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-67 | 2 | 164 | 11 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-67 | 2 | 164 | 11 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-67 | 2 | 164 | 11 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-67 | 2 | 164 | 8 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-67 | 2 | 164 | 8 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027173688.1 | 0.0 | NAC transcription factor 29-like | ||||
Swissprot | K4BNG7 | 5e-71 | NAP2_SOLLC; NAC domain-containing protein 2 | ||||
TrEMBL | A0A068UEZ3 | 0.0 | A0A068UEZ3_COFCA; Uncharacterized protein | ||||
STRING | VIT_06s0004g03080.t01 | 1e-108 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13390 | 11 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 9e-72 | NAC-like, activated by AP3/PI |
Publications ? help Back to Top | |||
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