PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g11010
Common NameGSCOC_T00024217001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GATA
Protein Properties Length: 317aa    MW: 34407.9 Da    PI: 9.1888
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g11010genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.4e-19219252134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  C++C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  Cc01_g11010 219 CTHCEVTKTPQWREGPMGPKTLCNACGVRYRSGR 252
                  *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.3E-16213263IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.899213249IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-14217250IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577163.71E-15218276No hitNo description
CDDcd002026.65E-17218267No hitNo description
PROSITE patternPS003440219244IPR000679Zinc finger, GATA-type
PfamPF003203.3E-17219252IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MSMVEPGYWD GGEDDFANLL GILDFPMESL EGDDELAGDW DASKSQSLGP IPSEAFMGLP  60
PVPQGNAGNR SLENLPKPNA VPKLNASGGQ TANQKQIPDY VKESSSTNTS RQITSSEGQE  120
SGSFQTHSPV SVLESGGSCS GGKSLPIKPD IVIPVRTRSK RARPSAINPW FVMAPISCAA  180
SASKRTSSHR KNKEKKKKKL SQLEKNETSL QRPVAAKKCT HCEVTKTPQW REGPMGPKTL  240
CNACGVRYRS GRLFPEYRPA ASPTFIPTLH SNSHRKVVEM RKKAVQETAI SSHDDAPMSP  300
APEFVPMSSY LFDFIY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160RTRSKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027085919.10.0GATA transcription factor 11-like
RefseqXP_027085926.10.0GATA transcription factor 11-like
TrEMBLA0A068UF300.0A0A068UF30_COFCA; Uncharacterized protein
STRINGXP_009621793.11e-113(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31342149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.22e-45GATA transcription factor 11