PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g07670
Common NameGSCOC_T00015434001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family TALE
Protein Properties Length: 726aa    MW: 78887 Da    PI: 8.7227
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g07670genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox314.3e-104234601954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ ++++ LAk++gLt +qV++WF N R +
  Cc01_g07670 423 FEHflHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVR 460
                  554459******************************88 PP
2BELL122.22.2e-39287358172
         BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  +rqe+q+kkakL+s+l+eV++rY+qy++q+q+v++sFe++ag+gsak+Yt+lAl++iS++FrcLkdai++qi
  Cc01_g07670 287 QRQEIQMKKAKLVSMLDEVEQRYRQYHHQMQIVVASFEQAAGIGSAKSYTQLALQTISKQFRCLKDAISGQI 358
                  69*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.4E-60213356IPR006563POX domain
PfamPF075262.1E-48219355IPR006563POX domain
PROSITE profilePS5007112.455401464IPR001356Homeobox domain
SMARTSM003891.8E-10404468IPR001356Homeobox domain
CDDcd000869.62E-13404465No hitNo description
SuperFamilySSF466895.99E-17405471IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.4E-29407470IPR009057Homeodomain-like
PfamPF059201.4E-18421460IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MAMYYQGGSE IQADGLQTLY LMNPNYAGGY SDAQQQPANM VILNYATGNT VNLASLASNQ  60
QPQTQHLVGV PLQGSLGSAA NSHELKHEVS APGRGGIPHF HPSLWGSLDH TGGAGAASQP  120
NIPSGVVVSN PSGGGAADVT RQLGFHRPVV SPRQQGLSLS LSSQQPGFRS LSTEQNISVQ  180
TPVGILSPRS GDNNLRGSGG SSSSVSAVSN GIHGLQSAVF GSKYLKAAQQ LLDELVNVGK  240
EIKSDTREKA KDKGKMNRES TVHSTGEASH IGQSDTKSGV TELTAAQRQE IQMKKAKLVS  300
MLDEVEQRYR QYHHQMQIVV ASFEQAAGIG SAKSYTQLAL QTISKQFRCL KDAISGQIKS  360
ASKSLGEEES LGGKLEGSRL KFVDQQLRQQ RALQQLGMMQ NNTWRPQRGL PERAVSVLRA  420
WLFEHFLHPY PKDSDKQMLA KQTGLTRSQV SNWFINARVR LWKPMVEEMY LEETKNHEQD  480
GSESNKELGS TSTTAKENNV ARIDQRSILQ SKQEKQIAQD ATHAEISTSS LTPSPTGTSP  540
QARGGFGLIG ALNMEANVEK NSKKMRTEMQ NSPSSILSVD MEMKFGEPRK GFDNKFSTSQ  600
RETNKDGFSL MVNNAGHGNG FGAFNLGELG QFNPEQLTTG FHGNSVSLTL GLPPSENLAL  660
SAGTQQNYLS DQNMELEDRL EMGTMDGHYD RVNKTQTSHS SLGYETINFD NRKRFAAQLL  720
PDFVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A8e-17410468563Homeobox protein Meis2
3k2a_B8e-17410468563Homeobox protein Meis2
4xrs_A7e-17410467158Homeobox protein Meis1
4xrs_B7e-17410467158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027082823.10.0BEL1-like homeodomain protein 1
RefseqXP_027082832.10.0BEL1-like homeodomain protein 1
RefseqXP_027082838.10.0BEL1-like homeodomain protein 1
TrEMBLA0A068V6M00.0A0A068V6M0_COFCA; Uncharacterized protein
STRINGVIT_06s0009g00410.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14782467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.32e-90BEL1-like homeodomain 1