PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g04540
Common NameGSCOC_T00041181001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NAC
Protein Properties Length: 340aa    MW: 38954.2 Da    PI: 8.7245
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g04540genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.97.5e-314611954128
          NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                  +ekewyfF++r++ky++g+r+nra+ +gyWkatg dk+v + +g+lvg kk Lvfy+g+ pkg+kt+W+mheyr+
  Cc01_g04540  46 GEKEWYFFTPRNRKYRNGERPNRAAGTGYWKATGADKPVNH-DGSLVGFKKALVFYEGKPPKGVKTNWIMHEYRV 119
                  689**************************************.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100538.0331145IPR003441NAC domain
PfamPF023658.8E-1544119IPR003441NAC domain
SuperFamilySSF1019416.15E-3844145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MNIFKINYNP SLNLPILGTP VTLSVLLKFY VLVFTVISSE RYPPIGEKEW YFFTPRNRKY  60
RNGERPNRAA GTGYWKATGA DKPVNHDGSL VGFKKALVFY EGKPPKGVKT NWIMHEYRVK  120
EPPRKRSNTM DMRLDDFVLC RIYKKTAKSF KSRPRNEDSE YLDQNDYPTP QGNERLDQNN  180
AYPLDMDMDN KNDLGGLDRE LNAFEASSGL VQSEYHIGLH EISNVMGTSL LADSVKCFNN  240
NFQIPFNCGA KPVNYKGIVY PMENALMPKY LREAPDVKPR KAMWNITKDY ETFNLSPEID  300
FGTSIYFPDL DNLMNNPPSN SCFENSNNPF DSPPMPKRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-444515168171NO APICAL MERISTEM PROTEIN
1ut4_B2e-444515168171NO APICAL MERISTEM PROTEIN
1ut7_A2e-444515168171NO APICAL MERISTEM PROTEIN
1ut7_B2e-444515168171NO APICAL MERISTEM PROTEIN
3swm_A3e-444515171174NAC domain-containing protein 19
3swm_B3e-444515171174NAC domain-containing protein 19
3swm_C3e-444515171174NAC domain-containing protein 19
3swm_D3e-444515171174NAC domain-containing protein 19
3swp_A3e-444515171174NAC domain-containing protein 19
3swp_B3e-444515171174NAC domain-containing protein 19
3swp_C3e-444515171174NAC domain-containing protein 19
3swp_D3e-444515171174NAC domain-containing protein 19
4dul_A2e-444515168171NAC domain-containing protein 19
4dul_B2e-444515168171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027122250.10.0NAC domain-containing protein 55-like
TrEMBLA0A068V4130.0A0A068V413_COFCA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52890.12e-45NAC domain containing protein 19