PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g04200
Common NameGSCOC_T00039293001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family EIL
Protein Properties Length: 664aa    MW: 75309.4 Da    PI: 6.4466
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g04200genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3432.15.2e-132353871330
                  XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkek 98 
                  eel++rmwkd+++lkrlker+k    +++ a++++ks+++++qarrkkmsraQDgiLkYMlk mevc+a+GfvYgiipekgkpv+gasd++raWWkek
  Cc01_g04200  35 EELERRMWKDRIKLKRLKERQKIA--AQQ-AAEKQKSKQTTDQARRKKMSRAQDGILKYMLKLMEVCQARGFVYGIIPEKGKPVSGASDNIRAWWKEK 129
                  8*******************9964..455.599***************************************************************** PP

                  XXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT--.---- CS
         EIN3  99 vefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdqgtppyk 196
                  v+fd+ngpaai ky+a++ +  ++ ++  ++ ++++ l++lqD+tlgSLLs+lmqhcdppqr++plekgv+pPWWP+G+e+ww +lgl+k q+ ppyk
  Cc01_g04200 130 VKFDKNGPAAIDKYEAECRVKVEGVGN--QNGNSQSILQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGVPPPWWPSGNEEWWIRLGLPKGQN-PPYK 224
                  ********************9988888..5799999*********************************************************.9*** PP

                  -GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX..XX.......XXXXXXXXXXXXXXXXXXXX CS
         EIN3 197 kphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah..ss.......slrkqspkvtlsceqkedve 285
                  kphdlkk+wkv+vLtavikhmsp+i++ir+l+rqsk+lqdkm+akes ++l+vl++ee+++++ s++  ss         r q++k  +s+++++dv+
  Cc01_g04200 225 KPHDLKKMWKVGVLTAVIKHMSPDIAKIRRLVRQSKCLQDKMTAKESLIWLNVLSREEALMQQPSSEngSSsiseapwRGRGQRKKPSVSSDSDYDVD 322
                  ******************************************************************97633577776655669*************** PP

                  XXXXXX.XXXXXXXXXX......................XXXXXXXXXXXXXXXXXXXXX......X CS
         EIN3 286 gkkeskikhvqavktta......................gfpvvrkrkkkpsesakvsskevsrtcq 330
                  g++ +   ++ ++++++                      + p  +kr + + e++ vs ++v  +c+
  Cc01_g04200 323 GTDGTDCVSS-KDNRRNqpldvaplkvvpqsvqekeqreERPKKKKRTRSNNENMLVS-QSVNEHCH 387
                  9999985544.44444459999999999997777666433333333333333333332.33445554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048734.5E-12535282No hitNo description
Gene3DG3DSA:1.10.3180.103.0E-71157289IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167681.7E-61163285IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042762Biological Processregulation of sulfur metabolic process
GO:0071281Biological Processcellular response to iron ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MEDIGVDISS DIEVDDIRCE NMAEKDVSDE EIEPEELERR MWKDRIKLKR LKERQKIAAQ  60
QAAEKQKSKQ TTDQARRKKM SRAQDGILKY MLKLMEVCQA RGFVYGIIPE KGKPVSGASD  120
NIRAWWKEKV KFDKNGPAAI DKYEAECRVK VEGVGNQNGN SQSILQDLQD ATLGSLLSSL  180
MQHCDPPQRK YPLEKGVPPP WWPSGNEEWW IRLGLPKGQN PPYKKPHDLK KMWKVGVLTA  240
VIKHMSPDIA KIRRLVRQSK CLQDKMTAKE SLIWLNVLSR EEALMQQPSS ENGSSSISEA  300
PWRGRGQRKK PSVSSDSDYD VDGTDGTDCV SSKDNRRNQP LDVAPLKVVP QSVQEKEQRE  360
ERPKKKKRTR SNNENMLVSQ SVNEHCHDVP KDMAPDINHT GVEYPGYKSE NDRTTAMSPI  420
EKDAESQSHL PVAELNHFST LPSANDIGAE NTFASNKSLL HQSAQNLELV PYDSGSHQEA  480
QDFQLHNIPE FSELHDGVPN SGVHYGPQDP SFQNRPQNAL LQHGPHPLQH DPHPQSTPLL  540
PGVHNSGMPQ AHQYHFYTPH VDIGLNRDGH QSVVAFNEFQ PRIENPEVNV PIIQRIGNEA  600
TSGDFDHYLK DRFENEQNAP VQNHFIPPLN SLSPDYPFLS MDETLLILLL KYDFWSRSWT  660
CCE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A1e-721622939140ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1360366ERPKKKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00233DAPTransfer from AT1G73730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027095299.10.0ETHYLENE INSENSITIVE 3-like 3 protein isoform X1
SwissprotO231161e-175EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLA0A068V2H50.0A0A068V2H5_COFCA; Uncharacterized protein
STRINGSolyc01g014480.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30423178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.11e-145ETHYLENE-INSENSITIVE3-like 3
Publications ? help Back to Top
  1. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  2. Zheng ZL,Zhang B,Leustek T
    Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing.
    Front Plant Sci, 2014. 5: p. 710
    [PMID:25566284]
  3. Panda SK,Sunkar R
    Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling.
    Plant Signal Behav, 2015. 10(4): p. e1010916
    [PMID:25912823]
  4. Wawrzyńska A,Sirko A
    EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor.
    Plant Sci., 2016. 253: p. 50-57
    [PMID:27968996]