PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc00_g33850 | ||||||||
Common Name | GSCOC_T00008118001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | Trihelix | ||||||||
Protein Properties | Length: 183aa MW: 21261 Da PI: 9.326 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 83.7 | 2.4e-26 | 58 | 134 | 2 | 77 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsesss 77 W ++e++ Li++rre++ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk+k++++++ ++++s Cc00_g33850 58 WVQDETRSLIAFRREVDALFNTSKSNKHLWEQISSKMREKGFDRSPTMCTDKWRNLLKEFKKLKQQDRGNnNCNNSG 134 *****************************************************************999874466554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 8.304 | 50 | 114 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-4 | 51 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-4 | 54 | 116 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.03E-25 | 56 | 121 | No hit | No description |
Pfam | PF13837 | 3.0E-19 | 57 | 150 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MYLAHRPRPI DSYKDLSSEE LVMDITPHVD LQQQQMILAD SGGEDHELRA PKKRAETWVQ 60 DETRSLIAFR REVDALFNTS KSNKHLWEQI SSKMREKGFD RSPTMCTDKW RNLLKEFKKL 120 KQQDRGNNNC NNSGSASSAN KMWYYKELEE LLRDRAKNGS YKSPPPPPPP PPPSAKVEAY 180 IHF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 5e-47 | 52 | 147 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027101967.1 | 1e-108 | trihelix transcription factor GT-1-like | ||||
Refseq | XP_027154656.1 | 1e-108 | trihelix transcription factor GT-1-like | ||||
Swissprot | Q9FX53 | 2e-65 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | A0A068VN54 | 1e-135 | A0A068VN54_COFCA; Uncharacterized protein (Fragment) | ||||
STRING | VIT_14s0171g00450.t01 | 2e-75 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5113 | 21 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13450.3 | 1e-63 | Trihelix family protein |
Publications ? help Back to Top | |||
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