PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc00_g33210 | ||||||||
Common Name | GSCOC_T00013033001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | Trihelix | ||||||||
Protein Properties | Length: 152aa MW: 16639.7 Da PI: 10.1493 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 42.5 | 1.7e-13 | 25 | 70 | 33 | 77 |
trihelix 33 evskkmrergferspkqCkekwenlnkrykkikegekkr.tsesss 77 + s+kmre+gf rsp++C++kw+nl k++kk+k++++++ ++++s Cc00_g33210 25 WLSSKMREKGFDRSPTMCTDKWRNLLKEFKKLKQQDRGNnNCNNSG 70 589*******************************999874466554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.8E-10 | 26 | 86 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MQWQTSRKSD GGGLAVAAGK WGSGWLSSKM REKGFDRSPT MCTDKWRNLL KEFKKLKQQD 60 RGNNNCNNSG SASSANKMWY YKELEELLRD RAKNGSYKSP PPPPPPPPPP SAKVEAYIHF 120 PDKGGLEDGS IPFGSVEGKG RGGNLELFGH V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 3e-19 | 26 | 83 | 39 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027101967.1 | 2e-52 | trihelix transcription factor GT-1-like | ||||
Swissprot | Q9FX53 | 2e-35 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | A0A068VMS8 | 1e-106 | A0A068VMS8_COFCA; Uncharacterized protein | ||||
STRING | VIT_14s0171g00450.t01 | 3e-39 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5113 | 21 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13450.3 | 3e-32 | Trihelix family protein |
Publications ? help Back to Top | |||
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