PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g30710
Common NameGSCOC_T00008502001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HSF
Protein Properties Length: 245aa    MW: 27749.5 Da    PI: 9.1327
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g30710genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind53.28e-178515123102
                   SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind  23 engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102
                   ++g+sfvv+d+++fa +vL kyF+h+nf+SF+ QLn Y    ++ ++          eF++ +F+kgkk+ l+kikr+ +
   Cc00_g30710  85 SSGTSFVVWDPHRFAAEVLGKYFRHNNFSSFICQLNRY----INWDR---------LEFQNAWFQKGKKSCLKKIKRRIQ 151
                   689**********************************9....44444.........79*******************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.7E-1776149IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.1E-1584149IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.5E-1684149IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.31E-1684149IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MEANQETSEV TNYTKYELKN GENEGERMNP TIPMETDVSE SSSNAIVTAA AAVSTTPFAK  60
QGYANGASSS SSWVRAPPPF LLKSSSGTSF VVWDPHRFAA EVLGKYFRHN NFSSFICQLN  120
RYINWDRLEF QNAWFQKGKK SCLKKIKRRI QGTQNAHLCK PLETEGQLSL SGEQKKFESL  180
IQEHDALKVE TMKLKDMEEN LEKEMEILEK QAQCITSKLQ NMVKHTIHEL LIRKAAKQKA  240
LRAQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142148LKKIKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027157042.11e-129heat stress transcription factor A-7a-like
TrEMBLA0A068VLU60.0A0A068VLU6_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1603026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.16e-20heat shock factor 1