PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cc00_g29220 | ||||||||
Common Name | GSCOC_T00013019001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 266aa MW: 29104.3 Da PI: 6.3078 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 24.4 | 6.5e-08 | 91 | 139 | 3 | 51 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 + ++rr NReA r++R++Kka+++ Lee++k+L N++L+ ++++ Cc00_g29220 91 STSKTRRSSGNREAVRKYREKKKAQTAYLEEEAKKLRLVNQQLIRKVQR 139 66789999************************************99987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.0E-12 | 87 | 157 | No hit | No description |
SMART | SM00338 | 8.1E-5 | 89 | 156 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.703 | 91 | 157 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 2.0E-11 | 93 | 139 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.0E-6 | 94 | 139 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 266 aa Download sequence Send to blast |
MDDREVELSH PVLVPNSDSS SSVQASISVD SFLDELLRNA QTCTHTHTCN PPGPDAAHTH 60 TCYHTHTQVI PSERVENPSE KVDGPCDSRK STSKTRRSSG NREAVRKYRE KKKAQTAYLE 120 EEAKKLRLVN QQLIRKVQRQ AILEAEISRL RSLLLDVRGK IDTELGAYPL QKQCISSFKV 180 KEGDSGMQYS GLAMELQCEN DLTCFHPQGD SSIEDGGFGG CDKMGASSWE GNCQSATVAC 240 KANGPAERNG MDSVETRLSS ASQAE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027157110.1 | 0.0 | basic leucine zipper 23-like | ||||
Refseq | XP_027157111.1 | 0.0 | basic leucine zipper 23-like | ||||
Refseq | XP_027162085.1 | 0.0 | basic leucine zipper 23-like | ||||
Refseq | XP_027162086.1 | 0.0 | basic leucine zipper 23-like | ||||
TrEMBL | A0A068VLV1 | 0.0 | A0A068VLV1_COFCA; Uncharacterized protein | ||||
STRING | Gorai.012G081200.1 | 1e-91 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15881 | 6 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G16770.1 | 2e-42 | bZIP family protein |