PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g28360
Common NameGSCOC_T00005593001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HSF
Protein Properties Length: 347aa    MW: 37678.9 Da    PI: 5.2904
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g28360genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.85.6e-36311212101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++++isw+e+g++f+v++++efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k ll++i+
   Cc00_g28360  31 FLTKTYQLVDDRTIDDVISWNEDGSTFIVWNPTEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFRRGEKGLLCDIQ 118
                   9*****************************************************************99.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
   Cc00_g28360 119 RRK 121
                   *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.3E-5727120IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.9E-3728120IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.68E-3528120IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.4E-3231120IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.2E-203154IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.2E-206981IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407094IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.2E-208294IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MAPPPVERNG GESTTTPPPP GDGPRSLPTP FLTKTYQLVD DRTIDDVISW NEDGSTFIVW  60
NPTEFARDLL PKYFKHNNFS SFVRQLNTYG FRKVVPDRWE FSNDCFRRGE KGLLCDIQRR  120
KLAAPPVAGA TISPVTVPTP TAAVSAIPPP RTVSPTDSGE EQVVSSTSSP SGFRETATAG  180
GSTAELIGEN ERLRKENMQL NKELSHMKSM CSNVYVLMSN YSNHSNGATA NSKAEGSSSQ  240
ALKALDLLPP KPIFDESGAT TECGGEDRMA VDEAGARIFG VSIGVKRGRE NGAAAAAEHD  300
KELQLQQPGT ADVKSEPIDD ENSNGDDQQT HWLRQCRIQN QRCVIK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-261912018129Heat shock factor protein 1
5d5v_B8e-261912018129Heat shock factor protein 1
5d5v_D8e-261912018129Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027103833.10.0heat stress transcription factor B-2c-like
TrEMBLA0A068VLL80.0A0A068VLL8_COFCA; Uncharacterized protein
STRINGXP_009803855.11e-128(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-81heat shock transcription factor B2A