PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g26230
Common NameGSCOC_T00004644001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family WOX
Protein Properties Length: 216aa    MW: 24927.3 Da    PI: 9.8229
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g26230genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.71.3e-20666257
                 T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 ++R+++t+eql +Lee+++   r+p+a+++++++++l    +++ ++V++WFqN++a+e++
  Cc00_g26230  6 STRWCPTPEQLMILEEMYRGgIRTPNASQIQRITAHLsfygKIEGKNVFYWFQNHKARERQ 66
                 68*****************99**************************************97 PP
2Wus_type_Homeobox121.53.3e-39567264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       ++tRW+PtpeQ++iLee+y+ G+rtPn+++iqrita+L+ yGkie+kNVfyWFQN+kaRerqk
        Cc00_g26230  5 NSTRWCPTPEQLMILEEMYRGGIRTPNASQIQRITAHLSFYGKIEGKNVFYWFQNHKARERQK 67
                       689***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.382267IPR001356Homeobox domain
SMARTSM003892.6E-4471IPR001356Homeobox domain
SuperFamilySSF466893.51E-11767IPR009057Homeodomain-like
PfamPF000462.9E-18766IPR001356Homeobox domain
CDDcd000864.15E-4767No hitNo description
Gene3DG3DSA:1.10.10.603.9E-7866IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MSSSNSTRWC PTPEQLMILE EMYRGGIRTP NASQIQRITA HLSFYGKIEG KNVFYWFQNH  60
KARERQKLRR KLSKQPYQQQ LLQEQLCLHR RHNQENKFLS SNESPPPALH QLSLDKSADY  120
LHPGGVGSAA AHMTSCTWKR DLPNMYELQN TSMMRSYGDD WMMMMLKMRD AGPTHYPSCC  180
SSNRPLKTLE LFPITTQNGK DHQATTSNPS RNSYL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in the lateral sepal axis-dependent development of flowers, probably by regulating the proliferation of L1 cells at the lateral region of flower primordia. Required for the formation of the margin cells of the first and second whorl organs. {ECO:0000269|PubMed:11751640, ECO:0000269|PubMed:15169755}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027107632.11e-143WUSCHEL-related homeobox 3-like
SwissprotQ9SIB43e-44WOX3_ARATH; WUSCHEL-related homeobox 3
TrEMBLA0A068VNJ61e-161A0A068VNJ6_COFCA; Uncharacterized protein
STRINGXP_010259966.19e-60(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29591951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.12e-41WOX family protein
Publications ? help Back to Top
  1. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  2. Niu L, et al.
    LOOSE FLOWER, a WUSCHEL-like Homeobox gene, is required for lateral fusion of floral organs in Medicago truncatula.
    Plant J., 2015. 81(3): p. 480-92
    [PMID:25492397]
  3. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  4. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]