PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g20050
Common NameGSCOC_T00006435001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C3H
Protein Properties Length: 896aa    MW: 100712 Da    PI: 8.7542
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g20050genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.31.3e-08199219526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   Cr+fa  G C++G++C+F H+
  Cc00_g20050 199 TCRNFAT-GNCRRGNQCRFLHP 219
                  5******.*************9 PP
2zf-CCCH17.85.9e-06280299626
                  -SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                  C++f+r G Ck G++C+F+H 
  Cc00_g20050 280 CKDFMR-GKCKWGASCRFSHH 299
                  ******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.901194221IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6195220IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-5195219IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-5199218IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-6200219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.765274301IPR000571Zinc finger, CCCH-type
SMARTSM003560.0024274300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4279300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.159325351IPR000571Zinc finger, CCCH-type
SMARTSM003560.031326350IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 896 aa     Download sequence    Send to blast
MDERGRKRKP LWDAEDENQT ISCSGKEYYS TYDGGRSNRF SSSKADNSSS MPKDHAGWPS  60
WDTLEENTTG KKVEGVYKNE QDELEMRERV VSPGFDGWGH RKHSNSSDDS LSRSRRYLEG  120
GRNRSRDRGR NRSRSPSWSK GRDRSGVRSR TMSRSRSRSR NRNRNSARGQ TRSRSPFHGH  180
RHDLQGWNDS SGSGRSSQTC RNFATGNCRR GNQCRFLHPD RMDRDYLEND FVERSRSRPD  240
RGHALAYGEG RGRQSWDKGS DSNHQEDDSF RSKSRGTICC KDFMRGKCKW GASCRFSHHV  300
DSGDNNGKDT RIALFERDRE HRTNESRKPL CKYFLAGKCH RDNCWFSHDG PIDSNHESRP  360
RDAGGRQSLV DKNDQWKGAT WDQGEPESKA VEGSRWSETV VPNRKIADAP LERRDNKWAH  420
ERSLRSPELK EKASEGNNYL STQDWSEDNG GDAGAIKSVV VESSYDRQEY PLISKGNLDL  480
VYTGSHAPNI TKKPSSQHLS EASLHAGLAE KSDILHHPTV AEDNIVNASS FDGLGQLKDN  540
RNTNNPEFMP GQSLNQNVIG NLSLNHPLVS NDQRDNLFFP HPSNVRNVDL NGSGQGLSST  600
LIIQNHAGSH QKEAAKTPEI QEFGAPRSFY NNASNNQVPQ NLLSPAAASP MHKFVAEQTQ  660
THLHAALNHL TSTALVSALE TAMQIQPNTD VRSPVQLDPL GDGRGKLGNV NQTSGEVPYS  720
YEQKNGIPFE EFSPMSGDNP QFGNTLISNI SNVQCHESPE SKQQEAPAAS EVKDNNTESV  780
VECQKGQEDL HKENGDEHVK VGNGNNNKDD KDMRLFKNAL VDFVKETLKP TWKEGRMSRE  840
VHKTIVKKVV DKVTSTMQDH IPKTQGKTDQ YLSHSKPKIT KLVQAYVERH LKTDS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153161RSRSRSRNR
2153163RSRSRSRNRNR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027094420.10.0zinc finger CCCH domain-containing protein 55-like
RefseqXP_027094421.10.0zinc finger CCCH domain-containing protein 55-like
TrEMBLA0A068VJ190.0A0A068VJ19_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.17e-11C3H family protein