PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g19890
Common NameGSCOC_T00007587001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 336aa    MW: 37281 Da    PI: 5.7336
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g19890genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.91.2e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd +++ +v ++G g+W++++++ g++R++k+c++rw +yl
      Cc00_g19890 14 RGPWTPEEDAKILAYVSRHGIGNWTLVPQKAGLNRCGKSCRLRWTNYL 61
                     89********************************************97 PP
2Myb_DNA-binding29.22.1e-0968105246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++T+eE+e ++++++  G++      + ++ gRt++++k++w++
      Cc00_g19890  68 DNFTPEEEECILELHRTIGSR------QQLP-GRTDNDVKNYWNT 105
                      68*******************......****.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-25564IPR009057Homeodomain-like
PROSITE profilePS5129426.274965IPR017930Myb domain
SuperFamilySSF466894.14E-2611103IPR009057Homeodomain-like
SMARTSM007174.6E-151363IPR001005SANT/Myb domain
PfamPF002498.3E-171461IPR001005SANT/Myb domain
CDDcd001673.77E-121661No hitNo description
Gene3DG3DSA:1.10.10.605.6E-1665111IPR009057Homeodomain-like
PROSITE profilePS5129412.3766111IPR017930Myb domain
SMARTSM007171.5E-566109IPR001005SANT/Myb domain
PfamPF002496.4E-869105IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048658Biological Processanther wall tapetum development
GO:0052545Biological Processcallose localization
GO:0055046Biological Processmicrogametogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGRPPCCDKA NVKRGPWTPE EDAKILAYVS RHGIGNWTLV PQKAGLNRCG KSCRLRWTNY  60
LRPDLKHDNF TPEEEECILE LHRTIGSRQQ LPGRTDNDVK NYWNTKLKKK LFNMGIDPVT  120
HKPFSQIFTE FGKLGNLPST INQNALLNTE PRIKPEPLLL PQKFPNANNL QIIEQYGRTL  180
SGNFLGQAAS QLQINGQETL ILPHLLGGIS TSASSPSSSS SVMNFGSQSF PCEPPQLQKS  240
PSSPSNWNET ILVDPFPSTG IEQNEEDYKI RRISSPDDIS SAAGASCYGL KPEPEAMRYM  300
ESSSSAADSF LESILASDSQ MQLEFPELLD GFCDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26141117108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027076523.10.0transcription factor MYB35-like
TrEMBLA0A068VIH00.0A0A068VIH0_COFCA; Uncharacterized protein
STRINGXP_009606135.11e-104(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.12e-70MYB family protein