PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g15460
Common NameGSCOC_T00001077001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family SAP
Protein Properties Length: 411aa    MW: 45813.6 Da    PI: 6.3994
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g15460genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP609.95.9e-1863241076455
          SAP  76 vfqvcstwravsrsdllwqrltrriWrrtkll..rdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfadGa 171
                    qvcstwravsrsdllwq+ltrriW+r +ll  ++tW ee+iy+hrta+nfr   y+y tlq+ pad ++  +++  sC +lalsd+ylaaG+++G+
  Cc00_g15460  32 STQVCSTWRAVSRSDLLWQNLTRRIWNREQLLltHNTWAEEFIYWHRTANNFRLHGYAYATLQLLPADYNN--NNEGISCTRLALSDHYLAAGLSNGS 127
                  569**************************765559*******************************96555..667********************** PP

          SAP 172 vrlfdletrlhvstflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpGraf 269
                  v lf++ +rlhvstf+p+hrdrlGrfs++vsGi++sd+++vfa+ldGdihva+i+     ++rra+ G+vvndGalvdf+Gs+rWwvGlyaGvpGraf
  Cc00_g15460 128 VCLFHVPNRLHVSTFHPHHRDRLGRFSSSVSGIILSDTQVVFASLDGDIHVAMINY--PNPPRRAHPGEVVNDGALVDFTGSNRWWVGLYAGVPGRAF 223
                  ********************************************************..67************************************** PP

          SAP 270 hiWdaeteelvfvGGsltdPeavmGWhmlte.ltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeeerrGlivssldasneayvvvdsrGva 366
                  h+W++eteelvfvGGsltdPeavmGWh+lt+ lte+vGr+rvt++e+av Ctslr+vvfdlrn++++l+ee ++r ++v+++das ++++vvd+rG a
  Cc00_g15460 224 HVWNSETEELVFVGGSLTDPEAVMGWHLLTDqLTEFVGRIRVTSHEAAVGCTSLRVVVFDLRNPDIILGEEVFQREIVVGCVDASGQSFMVVDNRGSA 321
                  *****************************96599**************************************************************** PP

          SAP 367 tvrrvenleevcrfrvrg.aqrgvlgCvnggyalvyaggvlrvWeiekkegylyslrervgevnalvaddrhvavsssdgtihlldfgaq 455
                  +vr v +leevcrf++rg +qr vlgC+nggya+++++gv+rvW+ie+ e ylyslrer+g++nalvad+rhva++s+d+tihl+dfgaq
  Cc00_g15460 322 SVRLVGTLEEVCRFTMRGaSQRDVLGCMNGGYAMLCTAGVIRVWNIENGE-YLYSLRERIGDANALVADERHVAACSRDTTIHLWDFGAQ 410
                  ******************9****************************977.*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.1280.501.0E-430101No hitNo description
SuperFamilySSF813831.66E-73378IPR001810F-box domain
SuperFamilySSF509785.49E-18100181IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.101.3E-15102186IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509785.49E-18241406IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.101.3E-15249407IPR015943WD40/YVTN repeat-like-containing domain
PROSITE profilePS502949.467360410IPR017986WD40-repeat-containing domain
PROSITE patternPS006780393407IPR019775WD40 repeat, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009908Biological Processflower development
GO:0030163Biological Processprotein catabolic process
GO:0046622Biological Processpositive regulation of organ growth
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
QTCVAPFPSR QIERKNVRNS DCGCADFSVI ESTQVCSTWR AVSRSDLLWQ NLTRRIWNRE  60
QLLLTHNTWA EEFIYWHRTA NNFRLHGYAY ATLQLLPADY NNNNEGISCT RLALSDHYLA  120
AGLSNGSVCL FHVPNRLHVS TFHPHHRDRL GRFSSSVSGI ILSDTQVVFA SLDGDIHVAM  180
INYPNPPRRA HPGEVVNDGA LVDFTGSNRW WVGLYAGVPG RAFHVWNSET EELVFVGGSL  240
TDPEAVMGWH LLTDQLTEFV GRIRVTSHEA AVGCTSLRVV VFDLRNPDII LGEEVFQREI  300
VVGCVDASGQ SFMVVDNRGS ASVRLVGTLE EVCRFTMRGA SQRDVLGCMN GGYAMLCTAG  360
VIRVWNIENG EYLYSLRERI GDANALVADE RHVAACSRDT TIHLWDFGAQ *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027061280.10.0transcriptional regulator STERILE APETALA
RefseqXP_027170134.10.0transcriptional regulator STERILE APETALA
SwissprotQ9FKH11e-147SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBLA0A068VHM00.0A0A068VHM0_COFCA; Uncharacterized protein (Fragment)
STRINGXP_009596786.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40992345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.11e-150SAP family protein
Publications ? help Back to Top
  1. Li N, et al.
    STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana.
    PLoS Genet., 2018. 14(2): p. e1007218
    [PMID:29401459]