PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g13890
Common NameGSCOC_T00003227001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family WRKY
Protein Properties Length: 558aa    MW: 60896.6 Da    PI: 8.7306
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g13890genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.51.1e-32226283260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkver+  +++++ei+Y+g+Hnh+k
  Cc00_g13890 226 DDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERNL-EGHITEIVYKGNHNHPK 283
                  8****************************************.***************85 PP
2WRKY105.33.2e-33391449159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d ++v++tYeg+Hnh+
  Cc00_g13890 391 LDDGYRWRKYGQKVVKGNPNPRSYYKCTYSGCPVRKHVERASHDLRAVITTYEGKHNHD 449
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-27216284IPR003657WRKY domain
SuperFamilySSF1182901.96E-24220284IPR003657WRKY domain
SMARTSM007749.2E-35225283IPR003657WRKY domain
PfamPF031061.4E-24226282IPR003657WRKY domain
PROSITE profilePS5081123.227226284IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.4E-37376451IPR003657WRKY domain
SuperFamilySSF1182902.48E-29383451IPR003657WRKY domain
PROSITE profilePS5081138.136386451IPR003657WRKY domain
SMARTSM007741.3E-38391450IPR003657WRKY domain
PfamPF031066.2E-26392449IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MASSGGSLNT SLNSYSSYSF PNQFMATSFS DLINGNNTST SAGTTPAEIP KFKSFPPTSL  60
PLSPPPVSPS SFLAFPPSLS PSVLLDSPVL FSNSSTLPSP TTGTFSSLVR KDEDTKFVSD  120
FSFQSQTRPP LSSSSLFHAS AGKSSSQEAS MKQQAGGWNF DNKPSQFIES SAVKHGIRSE  180
LAPTTQRLGA EVPATQGSMQ SDPAPDSSHV HYSQPSQYVR EQRKSDDGYN WRKYGQKQVK  240
GSENPRSYYK CTFPNCPTKK KVERNLEGHI TEIVYKGNHN HPKPQSTRRS SSQSIQNPSY  300
THSEISHHSN TLGENGQTDS LPNAENSSAS FGDDEFDQTS AISNSRDDDE NEPDAKRWKG  360
ENDSEAISVS GSKTVREPRI VVQTTSDIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTYS  420
GCPVRKHVER ASHDLRAVIT TYEGKHNHDV PAARGSGSYA VNRPSAINNN NDLPAAIKPL  480
ATNSNSVYRT NFANSLQNPI PRPQSQAPFT LQMLPSQGSF GISGNSASAN QVQQTGNAFH  540
MAKQEPKDDL FFNSFLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36226452878Probable WRKY transcription factor 4
2lex_A2e-36226452878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027068692.10.0probable WRKY transcription factor 33
SwissprotQ6B6R41e-124WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A068VGV00.0A0A068VGV0_COFCA; Uncharacterized protein
STRINGXP_009797862.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-124WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]