PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc00_g12990 | ||||||||
Common Name | GSCOC_T00006487001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | C3H | ||||||||
Protein Properties | Length: 338aa MW: 37522.5 Da PI: 6.6588 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.5 | 3.1e-10 | 173 | 197 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +++C++f++ GtC++Gd C +aHg Cc00_g12990 173 YSYVPCPDFHK-GTCQRGDACEYAHG 197 7799*******.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 1.2E-6 | 33 | 117 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 9.357 | 33 | 94 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 2.64E-8 | 35 | 120 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 9.164 | 68 | 94 | IPR002110 | Ankyrin repeat |
Pfam | PF00023 | 0.014 | 70 | 93 | IPR002110 | Ankyrin repeat |
CDD | cd00204 | 9.16E-7 | 70 | 117 | No hit | No description |
SMART | SM00356 | 5.9E-5 | 172 | 198 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.258 | 173 | 199 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.5E-8 | 173 | 197 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-5 | 175 | 199 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-4 | 205 | 235 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 25 | 207 | 230 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.174 | 207 | 231 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MCNGSKRKDC AVDLAMGDFV SSSSELLEFS ASDDLSAFMV AVEREGHGID ELAVWYGRRI 60 GSKEMGLEER TPLMIASMFG SKRVVNYILE KGSDGATALH CTVAGGFAAS LEIVRLLPSL 120 PDIKNGIYGT DEFRMYTFKI KPCSRAYLHD WTECPFVHPD ENARRRDPRK YHYSYVPCPD 180 FHKGTCQRGD ACEYAHGIFE CWLHPAQYRT RLCKDETNCT RRVCFFAHKP EELRPLYAST 240 GSAVPSPRSF SSTSSPIGGS MWPNQPTLAP PNLQLPGSRL KATINARDID LDAELLGLDG 300 NRQWRQQLLD DLSSLSILSY SDPQSPSPSP PHPPPPL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027124200.1 | 0.0 | zinc finger CCCH domain-containing protein 66-like | ||||
Swissprot | Q9LUZ4 | 1e-99 | C3H66_ARATH; Zinc finger CCCH domain-containing protein 66 | ||||
TrEMBL | A0A068VGJ1 | 0.0 | A0A068VGJ1_COFCA; Uncharacterized protein | ||||
STRING | AES71170 | 1e-112 | (Medicago truncatula) | ||||
STRING | Migut.F00690.1.p | 1e-112 | (Erythranthe guttata) | ||||
STRING | XP_010264619.1 | 1e-112 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58620.1 | 1e-90 | C3H family protein |