PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g11390
Common NameGSCOC_T00004898001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bZIP
Protein Properties Length: 257aa    MW: 27941.9 Da    PI: 6.5156
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g11390genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_154.82.1e-1777130356
                  XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                  +lkr +r+ +NRe+ArrsR+RK+a ++ Le+ v++L +eN +L k+l   +++ 
  Cc00_g11390  77 DLKRIKRMVSNRESARRSRRRKQAHLADLEQQVEQLRGENGSLFKQLGDASQQF 130
                  69*****************************************97776655554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.5E-1372131No hitNo description
SMARTSM003382.1E-1875139IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.04777140IPR004827Basic-leucine zipper domain
PfamPF001702.5E-1578129IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.21E-1278129No hitNo description
CDDcd147025.34E-780130No hitNo description
PROSITE patternPS0003608297IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDNPHWSHNL ASRHSSLSAT IDSQSSICVG SPTSATKSKG KDKRAMVATS GSSPEQSDDD  60
EVETEAGQCE ESTDPMDLKR IKRMVSNRES ARRSRRRKQA HLADLEQQVE QLRGENGSLF  120
KQLGDASQQF KDASTNNRVL KSDVEALRAK VKLAEDMVTR GSLTSSLSHL LQNYLSTPES  180
LNNANMCRGE NVSTIVTVRG VDPTYPDVGV SVQNSAARMG NVDNFNGDLK NGVTNDAMIC  240
MADLWPWESH AGSVTK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19198RRSRRRKQ
29398SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by glucose. {ECO:0000269|PubMed:18841482}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027085394.10.0basic leucine zipper 9-like isoform X2
SwissprotQ9FUD32e-66BZIP9_ARATH; Basic leucine zipper 9
TrEMBLA0A068VGH10.0A0A068VGH1_COFCA; Uncharacterized protein
STRINGVIT_04s0008g02750.t015e-99(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81392229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.14e-59basic leucine zipper 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ortiz-Espín A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]