PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g11360
Common NameGSCOC_T00010395001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 344aa    MW: 40817.7 Da    PI: 9.9616
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g11360genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3421.7e-1311101194
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  f+k l+ +d +++  +++p  f++++  ++ ++++++   +++  +sW v++  rkk++  y+ +  W +Fvk+++Lk gD ++F+l+++++f  +v
  Cc00_g11360  11 FIKLLM-EDDFTRE-IRIPYAFVRNFkeKLFSRCTIESEAKNSVRNSWPVRI--RKKGRYyYICKLSWPKFVKDHHLKLGDYLLFHLIDKTTF--KV 101
                  566664.4555555.8*******8887755566777777888888*******..888888677789*********************987777..44 PP
2B344.13.6e-142273061298
                  HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
           B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                    grl +p++f ++ ++    +k+++l+ e+ r+W vk+  + +s+   ++kGW eF ka +L+ g+++ F+l  r  +  +++++ r
  Cc00_g11360 227 HMGRLNIPRPFSRATKLAM--EKEVVLRGEDQREWPVKI--NERSE---IGKGWTEFRKAYKLEKGEICRFTLLARfGDL-FHIQIKR 306
                  458999******9998885..458***************..77774...8**********************98874444.6766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.9E-188109IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-168109IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-119102No hitNo description
PROSITE profilePS508639.9969107IPR003340B3 DNA binding domain
SMARTSM010194.6E-1111107IPR003340B3 DNA binding domain
PfamPF023621.1E-1111100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.3E-16213307IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-16213307IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.041216308IPR003340B3 DNA binding domain
CDDcd100171.34E-10217306No hitNo description
SMARTSM010194.3E-12220308IPR003340B3 DNA binding domain
PfamPF023622.9E-11227306IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEQNLNFNPS FIKLLMEDDF TREIRIPYAF VRNFKEKLFS RCTIESEAKN SVRNSWPVRI  60
RKKGRYYYIC KLSWPKFVKD HHLKLGDYLL FHLIDKTTFK VKPYGADCCP KKFNVYKSSS  120
SSSTDDESDD GSDDDSDETE FYGDDGIGPS KVHPARKKVY TKYQIDRDNF RSNKFRKLKK  180
TRKSGVGKRV LEIESEDGEE VEANEMDGYF DLNAENPYFI FRLKQHHMGR LNIPRPFSRA  240
TKLAMEKEVV LRGEDQREWP VKINERSEIG KGWTEFRKAY KLEKGEICRF TLLARFGDLF  300
HIQIKRASNM LRFFFFSFQN LCFFKLSFVR KIQQVIRRIF VQN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155178RKKVYTKYQIDRDNFRSNKFRKLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027076077.10.0B3 domain-containing protein REM23-like
TrEMBLA0A068VG250.0A0A068VG25_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48881327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09780.12e-11B3 family protein