PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g09000
Common NameGSCOC_T00001619001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family Trihelix
Protein Properties Length: 469aa    MW: 52779.9 Da    PI: 6.5349
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g09000genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix681.8e-21132228186
     trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                  +Wt++ v++Li+++ +++e+  ++            kk++W++vsk+++++g+ +sp+qC++k+++lnkrykk++++ +++ +++++++ ++++++e
  Cc00_g09000 132 KWTDSIVRLLIQVVANVGEDGPSEGaegarrksgiIKKGKWRKVSKVLMSKGLCVSPQQCEDKFNDLNKRYKKLNDILGRGtSCRVVENPALLNNME 228
                  7**************988888754335556677779*********************************************669**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.4E-17130254No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MNNNNPGSGF LSGYTGGFLG MNRNQQNPGG LLGMSRSHQQ NLSSIPSLMN MKSVAEKDSR  60
IGLREVKDSA PRGFAMTFAR ERVAGPRNVM SNGAVNINEI SSDEDDPSMA EGNGRDTGGG  120
KGKKDAPWVR MKWTDSIVRL LIQVVANVGE DGPSEGAEGA RRKSGIIKKG KWRKVSKVLM  180
SKGLCVSPQQ CEDKFNDLNK RYKKLNDILG RGTSCRVVEN PALLNNMEHL SDKAKEDVRK  240
LLGSKHLFYK EMCAYHNGQK ITDCNDFELP VHAASDGSPV AAQSSKDNDI SEGNDADEND  300
ESDHYMSEDE AAYNNASGSV DRVETSENRE MWKDYGNTRS RSEAGDDFQA EIAEMFSDPT  360
KSQWERREWI RKRMLQLHEE RIGIQAEAFE LEKQRLKWQR FCNKKELELE TARLEKERLI  420
IENERKALQL KQKEVEVEFR RPESTFNLTS FSIDIMGGRE QIDSGRQH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027077760.10.0uncharacterized protein LOC113701348
RefseqXP_027077771.10.0uncharacterized protein LOC113701348
RefseqXP_027149685.10.0uncharacterized protein LOC113749986
TrEMBLA0A068VET50.0A0A068VET5_COFCA; Uncharacterized protein
STRINGXP_009768464.11e-168(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA129131720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.15e-74sequence-specific DNA binding transcription factors