PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g00210
Common NameGSCOC_T00036098001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ARF
Protein Properties Length: 1114aa    MW: 122608 Da    PI: 6.7174
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g00210genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.87.3e-22135236199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae++       ++++++  +l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++++
  Cc00_g00210 135 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldftMQPPAQ--ELVARDLHENLWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEKQQ 228
                  99*****************************96555444..8************************************************..568888 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+++++r+
  Cc00_g00210 229 LLLGIRRA 236
                  9****997 PP
2Auxin_resp1171.6e-38261344183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+++s+F v+YnPras+seFv++++k+ ka+  +++s+GmRf+m+fete+s +rr++Gt++g+sdldp+rW+nS+Wr+L+
  Cc00_g00210 261 AAHAAANNSPFVVFYNPRASPSEFVIPLAKYYKAVCsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPLRWKNSQWRNLQ 344
                  79******************************998669********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.62E-43126264IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.1E-40126250IPR015300DNA-binding pseudobarrel domain
CDDcd100179.86E-18134226No hitNo description
PROSITE profilePS5086311.716135237IPR003340B3 DNA binding domain
PfamPF023625.2E-20135236IPR003340B3 DNA binding domain
SMARTSM010191.0E-21135237IPR003340B3 DNA binding domain
PfamPF065071.0E-33261344IPR010525Auxin response factor
PROSITE profilePS5174527.07510011086IPR000270PB1 domain
PfamPF023096.6E-710011086IPR033389AUX/IAA domain
SuperFamilySSF542778.5E-710141079No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1114 aa     Download sequence    Send to blast
MKTPATGAGA PSAAALANPS EGCEKKSINP ELWQACAGPL VNLPAAGTHV VYFPQGHSEQ  60
VAASMKKDVD AQIPNYPNLP SKLLCLLHNV TLHADPETDE VYAQMTLQPV PEFDKDALLR  120
SDLSTKANKP QTEFFCKTLT ASDTSTHGGF SVPRRAAEKI FPSLDFTMQP PAQELVARDL  180
HENLWTFRHI YRGQPKRHLL TTGWSLFVSG KRLFAGDSVL FIRDEKQQLL LGIRRANRQP  240
TNLSSSVLSS DSMHIGILAA AAHAAANNSP FVVFYNPRAS PSEFVIPLAK YYKAVCSNQI  300
SLGMRFRMMF ETEESGTRRY MGTITGISDL DPLRWKNSQW RNLQVGWDES TAGERRNRVS  360
IWEIEPVTAP FFICPTPSFF RPKRPRQPGM PDDDLSDLDS LFKRTMPWLG EDFGMKDPQA  420
LPGMSLVQWM NMQQNPSLAN TAQPNYLHSL PGSVMQNIAG ADLSRQLGLP APQAPQQNTL  480
QFAQRPTQQP QHLDQLQNLP PSTLNPLGSI IQPQQQLPDI SQQPRQPLIN QSLPTCQVQA  540
QLLQAQNLVQ SQNVLQQQQQ SSHQLQRSLS QNLQPSQPQQ QQQLMCQNSQ QNLLPSQSQD  600
PISQKLNFSE NPIQLQLLQK LHQQQQSLLA QQSAMQQPSQ LTQLHDQQKP LLDAPPSFSR  660
SLTSSQIQDV SQPIPTSIPQ SHVIPQQITR TNSQNNLRFN QRTQQPKLQQ QQSGVVPEVH  720
GHVGHSLTAT TNHLSAAGSS LLTGTAGGGP SGITDDIPSC STSPSTNNCP NGVQPSMNGR  780
THRGTAMGDE IAQPSAALLS SSGLETMSAS GNLVKDLLQK PDVKPSLNVS KSQNQGFFAH  840
QTYLNASGAQ MEYLDTQSSA TSVCLSQNDV QLPHGTNQMS FNSQPVLFRD TSQEVQADPR  900
NNVSFGANID NQFGMAMMPD SVSTKGMLGS GKDFSSNLDA GGGMISSYEN PKETQPELSS  960
SMVSQSFGVP DMTFNSIDSA INDGNFMNRG PWAPPQLPRM RTYTKVYKRG AVGRSIDITR  1020
YSGYEELKQD LARRFGIEGQ LEDRQRIGWK LVYVDHENDV LLVGDDPWEE FVNCVRYIKI  1080
LSPQEVQQMS LDGDFGNSVL PNQACSSSDG GNV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1702236545388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027173108.10.0auxin response factor 19-like isoform X1
TrEMBLA0A068UXX80.0A0A068UXX8_COFCA; Auxin response factor
STRINGXP_009762809.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19