PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10033936m | ||||||||
Common Name | CICLE_v10033936mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | B3 | ||||||||
Protein Properties | Length: 105aa MW: 12137 Da PI: 6.5907 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.3 | 2.4e-12 | 22 | 81 | 42 | 98 |
TS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS B3 42 sgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98 +g++We+ + +k+ +++ Wk F+ +n+Lk+gD +vF+l+ r ++ +++v+++r Ciclev10033936m 22 KGKEWEMVYLGedfQKRN--KRFGSEWKTFAIDNKLKVGDACVFELMeCRnDCLKFRVQILR 81 89*******667444444..45899********************88767799999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.335 | 1 | 83 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.1E-12 | 10 | 83 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.3E-12 | 19 | 81 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.2E-10 | 20 | 82 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.63E-10 | 23 | 81 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence Send to blast |
ILPAEMRRIL PSKTIPAFLV YKGKEWEMVY LGEDFQKRNK RFGSEWKTFA IDNKLKVGDA 60 CVFELMECRN DCLKFRVQIL RGDIPSKFED NTNSENEDTT IIVG* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006437349.2 | 3e-72 | B3 domain-containing protein Os04g0386900 | ||||
TrEMBL | V4SRX8 | 3e-71 | V4SRX8_9ROSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006437348.1 | 5e-72 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18654 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 7e-07 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10033936m |
Entrez Gene | 18043288 |