PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10033679m

Common Name

CICLE_v10033679mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NF-YC

Protein Properties

Length: 144aa MW: 16323.8 Da PI: 9.0857

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10033679m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	60.2	4.4e-19	6	94	10	97
NF-YC 10 iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 e++t+ + e+P+ r+kki+k ded++++++ea ++s++ elf+ l+ +s a e+kr+t+k d+ av+r + dfl+d p Ciclev10033679m 6 EEQNTETTRPEFPVGRVKKIMKLDEDINKVTSEALFVVSRSTELFLRFLAEKSAEAAIEKKRKTIKLGDMRVAVKRHRpTSDFLLDSLP 94 689999999***************************************************************9975389***987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	6.83E-19	7	95	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.6E-20	9	79	IPR009072	Histone-fold
Pfam	PF00808	4.9E-19	16	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MAEEAEEQNT ETTRPEFPVG RVKKIMKLDE DINKVTSEAL FVVSRSTELF LRFLAEKSAE 60 AAIEKKRKTI KLGDMRVAVK RHRPTSDFLL DSLPLPIQSL DRPATGKARS RPAVEKPLPV 120 GTRRIDRFFH KPENEVPVEI EDD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006438038.1	5e-98	nuclear transcription factor Y subunit C-6
TrEMBL	V4STV9	1e-96	V4STV9_9ROSI; Uncharacterized protein
STRING	XP_006438038.1	2e-97	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12860	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43250.1	1e-39	nuclear factor Y, subunit C13

Link Out ? help Back to Top
Phytozome	Ciclev10033679m
Entrez Gene	18043234