PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10033450m | ||||||||
Common Name | CICLE_v10033450mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | FAR1 | ||||||||
Protein Properties | Length: 127aa MW: 14550.4 Da PI: 8.2036 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 47.2 | 7.3e-15 | 49 | 108 | 1 | 64 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCka 64 +fYneYAk++GFsvr++ s+ks ++g+++++++vCskeg +++e + ++r+r + r gCk Ciclev10033450m 49 EFYNEYAKKAGFSVRINFSRKS-HTGKFVRKEYVCSKEGATTKEVVE---KKRRRGKVREGCKS 108 6*******************99.8888**************999766...88999999****96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.3E-12 | 49 | 108 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MNDIGVDTGE SYEEAMQEQR DKVYKPVVIP HDHMPRLGQE IVLLDDVHEF YNEYAKKAGF 60 SVRINFSRKS HTGKFVRKEY VCSKEGATTK EVVEKKRRRG KVREGCKSVG LTQFDPTAYI 120 QYAEDS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015389930.1 | 1e-38 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | V4TNB0 | 1e-88 | V4TNB0_9ROSI; Uncharacterized protein | ||||
STRING | XP_006438076.1 | 2e-89 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM33434 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 2e-08 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10033450m |
Entrez Gene | 18045244 |