PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10033384m
Common NameCICLE_v10033384mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 357aa    MW: 39280.6 Da    PI: 6.6742
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10033384mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.62.6e-28186246259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqKe+ +s++prsYYrCt++   +Cp+kk+v+r ++dp+++e+ Y g+H+++
  Ciclev10033384m 186 EDGYTWRKYGQKEILNSKYPRSYYRCTHQklyKCPAKKQVQRLDDDPSTFEVAYYGDHTCH 246
                      7****************************9999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-28181247IPR003657WRKY domain
SuperFamilySSF1182904.05E-26183247IPR003657WRKY domain
SMARTSM007745.4E-38185247IPR003657WRKY domain
PROSITE profilePS5081120.059186248IPR003657WRKY domain
PfamPF031062.3E-26186246IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEEIFSLILN GCKLAKDLEA NLPNIANQPE TISRSCDEII KSFCAAKERL NAAHHHQAPA  60
ALFYPPAAAA ETLFHEQQQQ QIIDASLQEW LRSSVTQTMS LMQTQHFVGR TPFHIGEMGA  120
KEMEGTSTTR LRSFGGDHHH HNVQPMDVSD SGRASSSSQP RHRRSGNART TTVPAPQIGN  180
TEIPPEDGYT WRKYGQKEIL NSKYPRSYYR CTHQKLYKCP AKKQVQRLDD DPSTFEVAYY  240
GDHTCHMSAT APSMVPASSS AEITQGMTTQ QSVTVQQPSS TSNIGRWLTM DVAAGGSSTG  300
AGPSTVRYER EVPGDYLVAN MADAMFNSGS SSSNSMEFLF SSSNVEEKGH PEDKKE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-21186245968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435942.10.0WRKY transcription factor 55
RefseqXP_006486151.10.0WRKY transcription factor 55
TrEMBLA0A2H5PNJ50.0A0A2H5PNJ5_CITUN; Uncharacterized protein
TrEMBLV4T7L20.0V4T7L2_9ROSI; Uncharacterized protein
STRINGXP_006486151.10.0(Citrus sinensis)
STRINGXP_006435942.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36412757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-52WRKY DNA-binding protein 55