PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10033382m
Common NameCICLE_v10033382mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TCP
Protein Properties Length: 470aa    MW: 52386.9 Da    PI: 7.3278
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10033382mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP150.21.4e-461222752134
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg....... 88 
                      +gkkdrhski+T++g+RdRR+Rls+++a++fFdLqd LGfdk+sktieWLl ++k+aikelt++  s +++c+++++s s+ ++s+        
  Ciclev10033382m 122 TGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDTLGFDKASKTIEWLLSKSKAAIKELTESLPSVKNSCTSGAKSLSSTSESEVvsgikri 215
                      79**************************************************************555556663333333332222223456666 PP

              TCP  89 ..............kaaksaakskksqksaasalnlakesrakarararertrekmrikn 134
                                    ++ + +    ++++++a ++ + +esr karararert ekm+++ 
  Ciclev10033382m 216 kdtgdqksalvvddSSVTLSRGAMNNKSRKAVTNPIVRESRDKARARARERTLEKMKMRG 275
                      67777888899985333333344555555555567777*******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.6E-45122273IPR005333Transcription factor, TCP
PROSITE profilePS5136936.819124182IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.029253270IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MFPSSSNNCD HHHFPFTNQS ILATENENPS SSQHHHQPSP FLDFPADQDQ PFLPNHDNEF  60
FMTHFFSQHQ ILGCSSDNVA ADETEIKMAS PVEATKKTTT KKKKNGGVNG DEKAQAVQRK  120
RTGKKDRHSK IYTAQGPRDR RMRLSLQIAR KFFDLQDTLG FDKASKTIEW LLSKSKAAIK  180
ELTESLPSVK NSCTSGAKSL SSTSESEVVS GIKRIKDTGD QKSALVVDDS SVTLSRGAMN  240
NKSRKAVTNP IVRESRDKAR ARARERTLEK MKMRGLEKSR KCSEGANPND LEQLRPCSPS  300
QEKNSSLKVV AEAEEEEDQM DSVRIIEKFL GFPSSPRSSS IFDYTLHIGE STAASSQQNN  360
PPYSTDYNSY YVLTNMKGST SNLHAKIPGD IFNINPDTCQ EEKSSSIYTS TANSNEQNPS  420
SDSRILSNSQ EQNPTSIFMT TSNIDSQPQF LEDQFSCNPI DDNRYCSLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-13129182154Putative transcription factor PCF6
5zkt_B4e-13129182154Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437744.10.0transcription factor TCP12
TrEMBLV4VET50.0V4VET5_9ROSI; Uncharacterized protein
STRINGXP_006437744.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116322533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.15e-39TCP domain protein 12