PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10032229m
Common NameCICLE_v10032229mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 304aa    MW: 34331.4 Da    PI: 5.3005
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10032229mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.3e-1892145356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k++++t++q++ Le+ Fe ++++  e++ +LAk+lgL+ rqV +WFqNrRa+ +
  Ciclev10032229m  92 KKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSR 145
                      45689***********************************************99 PP
2HD-ZIP_I/II119.61.6e-3892181291
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      kkrrl++ qv++LE++Fe e+kLeperKv+la+eLglqprqva+WFqnrRAR ++++lEkdy++Lk+ yd+lk++ ++L ke++ L++e+
  Ciclev10032229m  92 KKRRLTATQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARSRNQRLEKDYDSLKAVYDKLKDDYDNLLKEKQVLQNEV 181
                      9**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.41E-1980148IPR009057Homeodomain-like
PROSITE profilePS5007117.287147IPR001356Homeobox domain
SMARTSM003896.0E-1790151IPR001356Homeobox domain
PfamPF000466.7E-1692145IPR001356Homeobox domain
CDDcd000861.34E-1692148No hitNo description
Gene3DG3DSA:1.10.10.602.7E-1994155IPR009057Homeodomain-like
PRINTSPR000314.5E-6118127IPR000047Helix-turn-helix motif
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
PRINTSPR000314.5E-6127143IPR000047Helix-turn-helix motif
PfamPF021832.4E-13148188IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MKRKAMAACG NSVCGSQNVG TLLRNEKLPF YSELLDSFWL SKSPTSLQGP QSKANFENVG  60
EGSAARAPPF QSLDNEDNAY VDFDGWLGQS GKKRRLTATQ VQFLERNFEV ENKLEPERKV  120
QLAKELGLQP RQVAIWFQNR RARSRNQRLE KDYDSLKAVY DKLKDDYDNL LKEKQVLQNE  180
VLSLKDKLLL KEKGKGNLET FDAVTLLVAE PQKPVTSAET KTLFSSVPVV TCKQEDANSA  240
KSDVFDADSP HYTDGNHSSL IDPPDSSHYL LKLEDSCCYD DPPTNSRNFG FSLEDQLFWS  300
WPY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438572.10.0homeobox-leucine zipper protein HAT5 isoform X1
TrEMBLV4TES50.0V4TES5_9ROSI; Uncharacterized protein
STRINGXP_006438572.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.17e-33homeobox 1