PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10032101m
Common NameCICLE_v10031873mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 327aa    MW: 37022.6 Da    PI: 8.0357
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10032101mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-08193240455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++ Lq
  Ciclev10032101m 193 SHSLAERVRREKISERMKILQKLVPGC----DKVTGKAFMLDEIINYVQFLQ 240
                      8*************************9....555****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-17187256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.86E-9187244No hitNo description
PROSITE profilePS5088815.447189239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.8E-17189254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-6193240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9195245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MAAFSYQQHH HPFLLDSSEF IEEGSFFSQL YYPPKFPTHD DHQEMIVVNN NSNNLLDAAA  60
VFETSCGDNH DHHSDDNCNE PSNNNSLATK NQSTAVSSTE QQVTQSTVTT TATTTRMDKK  120
RKNRTNASSS FNSAQSKDPR EVKSKKQKKG NVNDAKKEEK ENSPKADSEK KVAKEPPKDY  180
IHVRARRGQA TDSHSLAERV RREKISERMK ILQKLVPGCD KVTGKAFMLD EIINYVQFLQ  240
NQVEFLSMKL ASVNPMFYDF GMDLDNTFMV RPDDQQLQHL KCNAAPQPSS QLLLTQPLPL  300
PQLIIAITIL FLILHFYFNK GRGQMP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.198681e-134fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2408780.0EU240878.1 Citrus sinensis cultivar Moro Nucellare 58-8D-1 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436929.10.0transcription factor bHLH137
TrEMBLV4TF300.0V4TF30_9ROSI; Uncharacterized protein
STRINGXP_006436929.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.23e-54bHLH family protein