PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10031962m
Common NameCICLE_v10031666mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 351aa    MW: 39473.9 Da    PI: 8.0316
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10031962mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.6e-06326226
                     -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                     k++lC+ffa  G C  G+ C F+H+
  Ciclev10031962m  3 KRVLCKFFAH-GACLKGEHCEFSHD 26
                     99****6666.*************5 PP
2zf-CCCH19.71.5e-063454526
                     --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                     +C ++++ G+C+y +rC++ H+
  Ciclev10031962m 34 ICTYYQK-GFCSYASRCRYEHV 54
                     7******.***********997 PP
3zf-CCCH19.61.6e-06131153326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      +++C+ fa+ G C++G++C+ +Hg
  Ciclev10031962m 131 RSICS-FAAAGNCPRGEKCPHIHG 153
                      67899.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.671128IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-5127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-7326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-4328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4742956IPR000571Zinc finger, CCCH-type
SMARTSM003560.00313055IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-43453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.178128155IPR000571Zinc finger, CCCH-type
SMARTSM003560.0021129154IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-4133154IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.97E-13186261No hitNo description
Gene3DG3DSA:3.30.40.109.5E-10192256IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00299196256No hitNo description
PROSITE profilePS5008912.238197255IPR001841Zinc finger, RING-type
SMARTSM001843.2E-7197254IPR001841Zinc finger, RING-type
PfamPF000974.1E-7197254IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180221230IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.21284312IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.061284313IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MSKRVLCKFF AHGACLKGEH CEFSHDWKDP PNNICTYYQK GFCSYASRCR YEHVKPSRSE  60
LAASSSSSVS HPSRATSSGI TKVPGVMPEL SALSRPFLPP NKTAWNPESV CNDSLENDEV  120
DEPRNLKPAD RSICSFAAAG NCPRGEKCPH IHGDTCPTCG KQCLHPFRPE EREEHMKSCE  180
KKQKHLEALR RSQEIECSVC LDRVLSKPTA AERKFGLLSE CDHPFCISCI RNWRSSSPTS  240
GMDVNTALRA CPICRKLSYF VIPSVIWYYT PEEKQEIIDS YKSKLKSIDC KHFNFGNGNC  300
PFGTSCFYKH AYTDGRLEEV VLRHLGSDDG STVIAKDIRL SEFLTNMHIR *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.202600.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015387312.10.0putative RING-type E3 ubiquitin transferase C3H69 isoform X6
RefseqXP_015387313.10.0putative RING-type E3 ubiquitin transferase C3H69 isoform X6
SwissprotE0X9N40.0C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLV4TR580.0V4TR58_9ROSI; Uncharacterized protein
STRINGXP_006482894.10.0(Citrus sinensis)
STRINGXP_006439134.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-164C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]