PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10031903m
Common NameCICLE_v10031903mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 364aa    MW: 41461.6 Da    PI: 4.8908
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10031903mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32e-0689112226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      k  lC ff + G+C+ G +CkF+H+
  Ciclev10031903m  89 KSILCEFFKA-GQCQKGFKCKFSHD 112
                      6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.27287114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-687112IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-587113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-489112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.056157195IPR000571Zinc finger, CCCH-type
SMARTSM003562.8157194IPR000571Zinc finger, CCCH-type
PfamPF165434.9E-17216295IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MPPKQSKADL AKKQKVVEDK TFGLKNKNKS KNVQKYVQSL KQSVEPRPDP TKVAVKKKKE  60
EEKAREKELN DLFKVAVTQP KVPVGVDPKS ILCEFFKAGQ CQKGFKCKFS HDLNIQRKGE  120
KIDIYSDKRD GETMEDWDQE TLEKVVESKK MEYNQNKPTE IVCKYFLEAV EKKQYGWFWV  180
CPNGGKECHY RHALPPGYIL KSQMKALLEE ESDRLPIEDE IEDQRGKLKS TTPMTTELFM  240
QWKKKKMEER NAGLAAQQAE RAKNDRMSGR ELFLSNASLF VDDAEAFEEY HREEEAESNE  300
QKGKDESATS GPSNSSGAVA DSEEILPDDD DDDELDLDEL NELEASLSRT SIQICEPGIE  360
ASS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436191.10.0zinc finger CCCH domain-containing protein 11
SwissprotQ0JHZ20.0C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A067FXF40.0A0A067FXF4_CITSI; Uncharacterized protein
TrEMBLA0A2H5NZ600.0A0A2H5NZ60_CITUN; Uncharacterized protein
TrEMBLV4TI730.0V4TI73_9ROSI; Uncharacterized protein
STRINGXP_006436191.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48742333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-170C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]