PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10031666m
Common NameCICLE_v10031666mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 416aa    MW: 47297.6 Da    PI: 6.9788
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10031666mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.8e-065070526
                     --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                     +C ++++ G+C+y +rC++ H+
  Ciclev10031666m 50 ICTYYQK-GFCSYASRCRYEHV 70
                     7******.***********997 PP
2zf-CCCH19.32e-06147169326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      +++C+ fa+ G C++G++C+ +Hg
  Ciclev10031666m 147 RSICS-FAAAGNCPRGEKCPHIHG 169
                      67899.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.5441744IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-51843IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-71842IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4744572IPR000571Zinc finger, CCCH-type
SMARTSM003560.00314671IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-45069IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.178144171IPR000571Zinc finger, CCCH-type
SMARTSM003560.0021145170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-4149170IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.77E-13202277No hitNo description
Gene3DG3DSA:3.30.40.101.3E-9208272IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00219212272No hitNo description
PfamPF000975.3E-7213270IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.238213271IPR001841Zinc finger, RING-type
SMARTSM001843.2E-7213270IPR001841Zinc finger, RING-type
PROSITE patternPS005180237246IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.18300328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.394300329IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MSKRYCYCHN NILWLFDSFR VLCKFFAHGA CLKGEHCEFS HDWKDPPNNI CTYYQKGFCS  60
YASRCRYEHV KPSRSELAAS SSSSVSHPSR ATSSGITKVP GVMPELSALS RPFLPPNKTA  120
WNPESVCNDS LENDEVDEPR NLKPADRSIC SFAAAGNCPR GEKCPHIHGD TCPTCGKQCL  180
HPFRPEEREE HMKSCEKKQK HLEALRRSQE IECSVCLDRV LSKPTAAERK FGLLSECDHP  240
FCISCIRNWR SSSPTSGMDV NTALRACPIC RKLSYFVIPS VIWYYTPEEK QEIIDSYKSK  300
LKSIDCKHFN FGNGNCPFGT SCFYKHMVKP GSYMWKYHRP PPRRPPPFRP PPSRSNVVDM  360
DSFIDAFGDL LGEDEPDFFD AENEVRMALD VEMALLLTQL DFDSSDSSDY ESYLD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.202600.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024041558.10.0putative RING-type E3 ubiquitin transferase C3H69 isoform X2
SwissprotE0X9N41e-152C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLV4VIC10.0V4VIC1_9ROSI; Uncharacterized protein
STRINGXP_006439134.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-140C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]