PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10031361m
Common NameCICLE_v10031361mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 487aa    MW: 54476.3 Da    PI: 7.993
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10031361mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.93.2e-11197236544
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 
                      k  rr+++NReAAr+sR+RKka++++Le    +L++  ++
  Ciclev10031361m 197 KTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQE 236
                      7789************************876666655554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.4E-8192239No hitNo description
SMARTSM003387.1E-8193277IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.289195239IPR004827Basic-leucine zipper domain
CDDcd147081.35E-22197249No hitNo description
PfamPF001702.2E-8197237IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.75E-7197239No hitNo description
PROSITE patternPS000360200215IPR004827Basic-leucine zipper domain
PfamPF141442.9E-31286360IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MATSTSNKVT NNQLHHQQHI QQQHQQIQVQ DHHHHHHQNN QNQNQNQIAF GMMQQSPSIP  60
GGNYIKDSGG GAYDLGELDQ ALFLYLDGQD PSTVHNHQDQ RQSSGMRPPT LNIFPSQPMH  120
VEPSSTNNHK AATALVSSTT NNSSKRPSEP SMELANARNN APSSGPETAK AIKREGNRKG  180
PTSSNSEHEG PKTPDPKTLR RLAQNREAAR KSRLRKKAYV QQLESSRIKL TQLEQELQRA  240
RTQGMFFGGI LGGEQGLPVG ISNISSEAAV FDMEYARWLE VHHRLMCELR AAVQEHLPEN  300
ELRLYVDNCL AHYDEIMNLK GMVAKTDVFH LVSGLWKSPA ERCFLWLGGF RPSELIKVIL  360
SQIEPLTEQQ ILGICGLQQS TQEAEDALSQ GLEALNQSIL DTIASDSLSC PPNMANYMGQ  420
MAVAMNKLST LEGFVRQADN LRHQTIHRLN QILTTRQAAR CLLAIAEYFH RLRALSSLWM  480
ARPRQE*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:12777042}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437046.10.0bZIP transcription factor TGA10 isoform X2
SwissprotQ52MZ20.0TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLV4TKH30.0V4TKH3_9ROSI; Uncharacterized protein
STRINGXP_006437046.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72072843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.30.0bZIP family protein