PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10031306m
Common NameCICLE_v10031306mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family AP2
Protein Properties Length: 504aa    MW: 55041 Da    PI: 8.4476
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10031306mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.74.6e-16178227155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++ rW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Ciclev10031306m 178 SQYRGVTFYRRTSRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAAIKFRG 227
                      78*******************......55************************997 PP
2AP241.43.6e-13270320155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+ +k  grW+A+       g    +k+++lg f+ + eAa+a+++a+ k +g
  Ciclev10031306m 270 SKYRGVTLHK-CGRWEAR---M---GqllGKKYVYLGLFDNEAEAARAYDKAAIKQNG 320
                      89********.7******...5...334336**********99**********99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-8178227IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-15178235IPR016177DNA-binding domain
CDDcd000181.08E-22179234No hitNo description
Gene3DG3DSA:3.30.730.104.1E-16179234IPR001471AP2/ERF domain
SMARTSM003801.0E-30179241IPR001471AP2/ERF domain
PROSITE profilePS5103216.99179235IPR001471AP2/ERF domain
PfamPF008471.2E-8270320IPR001471AP2/ERF domain
CDDcd000182.34E-24270330No hitNo description
SuperFamilySSF541713.53E-16270329IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-15271328IPR001471AP2/ERF domain
SMARTSM003806.2E-29271334IPR001471AP2/ERF domain
PROSITE profilePS5103215.567271328IPR001471AP2/ERF domain
PRINTSPR003678.9E-6272283IPR001471AP2/ERF domain
PRINTSPR003678.9E-6310330IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MLDLNLDIAS CESSSICADK NKKKINYSSN NNIKITAMQM EDSGTSNSSV INNEEAADNA  60
SNNHVSFPFV FGIFKKENED DDNNNNNYQP AASAAAAAAA ILDDKAVPIT RQLFPVTGAG  120
STTSATTGQW LNLSCATAAA AADDVDDESA AGGQGLKPVQ QKPQQVRKSR RGPRSRSSQY  180
RGVTFYRRTS RWESHIWDCG KQVYLGGFDT AHSAARAYDR AAIKFRGVDA DLNFGVTDYE  240
EDMKQMKHLS KEEFVLILRR QSNGFARGSS KYRGVTLHKC GRWEARMGQL LGKKYVYLGL  300
FDNEAEAARA YDKAAIKQNG REAVTNFEPS AYQRETLLDS KNGGSSNNLN LDLSIGISQP  360
SSTIYCEACQ MPNKERRVLD STVYASMGVQ LQPHHPHHGL TMPPQSHEEM AKEKRVQGVS  420
SPGFTNWAWQ MHNNGSVAAM PVNLLSSAAS SGFSSSPTTA PAANTIQVQQ QINNNPAARN  480
MFLATQNTSA AIDNSHHLRN YRS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436192.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X1
RefseqXP_006485948.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotB8AMA91e-105AP22_ORYSI; APETALA2-like protein 2
TrEMBLA0A2H5NZH30.0A0A2H5NZH3_CITUN; Uncharacterized protein
TrEMBLV4T8670.0V4T867_9ROSI; Uncharacterized protein
STRINGXP_006485948.10.0(Citrus sinensis)
STRINGXP_006436192.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM164641011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.35e-74related to AP2.7